Locus 5933

Sequence ID 2L_DroMel_CAF1
Location 16,745,257 – 16,745,374
Length 117
Max. P 0.718697
window9431

overview

Window 1

Location 16,745,257 – 16,745,374
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.11
Mean single sequence MFE -46.15
Consensus MFE -26.18
Energy contribution -27.90
Covariance contribution 1.72
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.57
SVM decision value 0.39
SVM RNA-class probability 0.718697
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16745257 117 - 22407834
CGGCGCU---GCGGGCAGACAUCAUCUAAAGCGCGGCUGCAUCAUUUGCAGCAUAUUGGGAUGUCCUUGCAGCAUCACGCCCAUUCCAGGCAUUGCCAUCGCUCCUGCUGGUAAGGCACC
.((((((---(((((..((((((..((((......((((((.....))))))...)))))))))))))))))).....(((.......)))...)))...(((((....))...)))... ( -43.80)
>DroVir_CAF1 11809 115 - 1
GGGCGCAGCAGCGGGCAGGCAUCAUCUGAAACGCGGCUGCAUCAUCUGCAACAUAUUCGGAUGUCCUGGCAGCAUUACGCUCAUGCCCGGCAUAGGCAUCGCGCCAGCAGGCAAG-----
..(((((((.(((..((((.....))))...))).))))).....((((...........(((.((.((((((.....))...)))).))))).(((.....))).))))))...----- ( -42.20)
>DroPse_CAF1 10818 117 - 1
CGGCGCU---GCGGGCAGACAUCAUCUGAAUCGCGGCUGCAUCAUCUGCAGCAUAUUCGGAUGACCCUGCAGCAUUACGCCCAUGCCAGGCAUAUGCAUGGCCCCCGCAGGCAGUGCUCC
.((((((---((((((((...((((((((((....((((((.....))))))..))))))))))..)))).((.....))))..((((.((....)).))))........)))))))).. ( -52.10)
>DroGri_CAF1 9521 112 - 1
CGGCGCA---CCGGGUAUGCAUCAUCUAAAUCGCGGCUGCAUCAUCUGCAACAUAUUCGGAUGACCCGGCAACAUGACACCCAUGCCUGGCAUUGGCAUCGCACCAGCGGGCAAA-----
..((((.---(((((((((..((((.......(..((((..(((((((.........)))))))..))))..)))))....))))))))).....)).((((....))))))...----- ( -33.71)
>DroMoj_CAF1 9704 112 - 1
UGGCGCA---GCGGGCAGGCAUCAUCUGAAGCGUGGCUGCAUCAUCUGCAGCAUAUUCGGAUGGCCAGGCAGCAUUACGCUCAUGCCCGGCAUCGGCAUAGCACCCGCGGGCAAG-----
..((.(.---(((((...((..((((((((.....((((((.....))))))...))))))))(((.((((((.....))...)))).))).........)).)))))).))...----- ( -49.10)
>DroAna_CAF1 8631 117 - 1
CGGCGCU---GCCGGCAAACAUCAUCUGAAUCGUGGCUGCAUCAUCUGCAGCAUGUUCGGAUGACCCGGCAGCAUUACUCCCAUUCCGUGCAUGGGCAUGGCUCCAGCGGGUAGAGUGCC
.((((((---(((((......(((((((((.((((.(((((.....)))))))))))))))))).))))))))....(((((....(((((....)))))((....))))).))...))) ( -56.00)
>consensus
CGGCGCA___GCGGGCAGACAUCAUCUGAAUCGCGGCUGCAUCAUCUGCAGCAUAUUCGGAUGACCCGGCAGCAUUACGCCCAUGCCAGGCAUAGGCAUCGCACCAGCGGGCAAG_____
.((((.....((..((.....(((((((((.....((((((.....))))))...)))))))))....)).))....))))..((((..((....))...((....)).))))....... (-26.18 = -27.90 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:54 2006