Locus 5931

Sequence ID 2L_DroMel_CAF1
Location 16,738,823 – 16,738,932
Length 109
Max. P 0.560711
window9428

overview

Window 8

Location 16,738,823 – 16,738,932
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.89
Mean single sequence MFE -30.47
Consensus MFE -18.84
Energy contribution -18.48
Covariance contribution -0.36
Combinations/Pair 1.52
Mean z-score -1.51
Structure conservation index 0.62
SVM decision value 0.05
SVM RNA-class probability 0.560711
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16738823 109 - 22407834
AAAUCGUGACUUGUCAGGUGGGUGGCAACAAUGACGGUAAGGAGAAGCGCCGCAAGGAGUCCAUUCUGGACCUCUCCAAGUACUUGGAGAAACAGAUCCGCGUGAAAUU
.............(((.(((((((....)..((..(((.((((...((.((....)).))...))))..)))(((((((....)))))))..)).)))))).))).... ( -35.20)
>DroVir_CAF1 3896 106 - 1
UUA---UCGCUUCCUAGACAGGUGGCAACAACGAUGGCAAAGAGAAACGCCGCAAGGAGUCUAUUCUGGAUCUAUCCAAAUAUCUGGAGAAGCAAAUACGCGUCAAAUU
...---..((((((((((..(.((....)).)(((((...((((..((.((....)).))...))))....)))))......))))).)))))................ ( -27.80)
>DroPse_CAF1 4252 109 - 1
UGUACGUCUCCUUCCAGGUGGGUGGAAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUCCGUGUGAAAUU
.((...(((((((((..((.(.((....)).).)))).)))))))...))((((.(((((((.....))))(((((((......))))....))).))).))))..... ( -33.60)
>DroMoj_CAF1 2034 106 - 1
UAA---GUGCUUUUUAGACAGGAGGCAACAAUGAUGGAAAGGAAAAGCGCCGAAAGGAGUCUAUUUUGGAUCUGUCCAAAUACCUGGAGAAACAAAUACGUGUGAAAUU
...---.((.(((((...((((.(....)...((((((..((((.(((.((....)).).)).))))...))))))......)))).)))))))............... ( -21.10)
>DroAna_CAF1 2138 99 - 1
U----------UUUUAGAUUGGCGGCAACAACGAUGGCAAGGAGAAGCGCCGCAAGGAGUCCAUUCUGGACCUCUCCAAGUAUCUCGAGAAACAGAUACGCGUCAAAUU
.----------.......((((((....).......((..(((((....((....)).((((.....)))).)))))..((((((........)))))))))))))... ( -31.50)
>DroPer_CAF1 2169 109 - 1
UGUACGUCUCCUUCCAGGUGGGUGGAAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUCCGUGUGAAAUU
.((...(((((((((..((.(.((....)).).)))).)))))))...))((((.(((((((.....))))(((((((......))))....))).))).))))..... ( -33.60)
>consensus
UAA___UCGCUUUCCAGAUGGGUGGCAACAAUGACGGCAAGGAGAAACGCCGCAAGGAGUCCAUUCUGGACCUGUCCAAAUAUCUGGAGAAACAGAUACGCGUGAAAUU
...........(((((((((...(....)...(((((...((((..((.((....)).))...))))....)))))....))))))))).................... (-18.84 = -18.48 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:52 2006