Locus 593

Sequence ID 2L_DroMel_CAF1
Location 1,800,816 – 1,800,911
Length 95
Max. P 0.974564
window978

overview

Window 8

Location 1,800,816 – 1,800,911
Length 95
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.90
Mean single sequence MFE -15.44
Consensus MFE -12.85
Energy contribution -13.60
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.94
Structure conservation index 0.83
SVM decision value 1.73
SVM RNA-class probability 0.974564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1800816 95 + 22407834
AAACAUCCUUUCUGA---------CGGAUGACA-CUCACAUUGCAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU
.............((---------((((.((((-(((((.............................................)))).))))).)))))).... ( -15.78)
>DroSec_CAF1 25790 105 + 1
AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU
.......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33)
>DroSim_CAF1 2969 105 + 1
AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU
.......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33)
>DroEre_CAF1 10611 105 + 1
AAAUAUCCUUUCUGAUUUCCCGCACGGAUGACAUCUCACUUUGCAUAUCCUCACUCUUUCCCUCUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU
.......................(((((.(((((.(((((...........................................))))).))))).)))))..... ( -15.33)
>consensus
AAAUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACUCUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU
.......................(((((.(((((.(((((...........................................))))).))))).)))))..... (-12.85 = -13.60 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006