Locus 5926

Sequence ID 2L_DroMel_CAF1
Location 16,711,670 – 16,711,787
Length 117
Max. P 0.645561
window9423

overview

Window 3

Location 16,711,670 – 16,711,787
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.81
Mean single sequence MFE -37.50
Consensus MFE -32.12
Energy contribution -32.13
Covariance contribution 0.01
Combinations/Pair 1.17
Mean z-score -1.94
Structure conservation index 0.86
SVM decision value 0.23
SVM RNA-class probability 0.645561
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16711670 117 - 22407834
CGGUCAGGGCCUACCUAGCUGAAUCC-AAA--AAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGCGCUACCGACACCC
((((.((.((((((((((((....((-...--....))......)))))...((((((..((.....)).))))))(((((((........))))))))))))..)).))))))...... ( -39.50)
>DroSec_CAF1 166298 119 - 1
CGGUCAGGGCCUACCUAGCUGAAUCA-AAAAAAAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGUGCUAACGCCGCCC
(((..(((.....)))..))).....-.........(((.......((((..((((((..((.....)).))))))(((((((........))))))).))))..(.((....)))))). ( -38.40)
>DroEre_CAF1 167563 120 - 1
CGGUCAGGGCCUACCUAGUUGAAACCCAAAAAAAAGGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUUGAGGGACCGUUAGCGAUACCC
(((((.((((.((((.........(((........))).......((.....((((((..((.....)).)))))).....)).......)))).))))....)))))............ ( -34.60)
>consensus
CGGUCAGGGCCUACCUAGCUGAAUCC_AAAAAAAAAGGCAAGAAAGCUACAGGGCAGCCACCAGAAAGGAGCUGCCAACUUGCAUAUUACGGUAAGUUGGUGGGAGCGCUAACGACACCC
(((..(((.....)))..)))................(((((....(....)((((((..((.....)).))))))..))))).......(((..(((((((....)))))))...))). (-32.12 = -32.13 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:46 2006