Locus 5902

Sequence ID 2L_DroMel_CAF1
Location 16,683,437 – 16,683,554
Length 117
Max. P 0.922497
window9364

overview

Window 4

Location 16,683,437 – 16,683,554
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 92.88
Mean single sequence MFE -25.23
Consensus MFE -21.02
Energy contribution -22.02
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -2.32
Structure conservation index 0.83
SVM decision value 1.15
SVM RNA-class probability 0.922497
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16683437 117 + 22407834
AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCUGCAAAUCCACGCUUGCGUUCUUUCCCCUUCUAAAUCCCAGUCACUCCUGAUCUUGGCUUACUGGAGGAGACUAAAUCC
.((((((..........((((.....)))).........((((........))))))))))((.(((((......(((((((....))))..)))......))))).))........ ( -20.40)
>DroSec_CAF1 138314 117 + 1
AAAGAGCAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUUCCCCUUCUAAAUCCAAGUCACUCCUGAUCUUGGCUUACUGGAGGAGACUAAAUCC
.((((((..........((((.....)))).........((((........))))))))))((.(((((.....((((((((....))).)))))......))))).))........ ( -24.10)
>DroEre_CAF1 138765 117 + 1
AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUGCCCCCUUCUAAGCCAAAGUCAUUGCUGAUCUUGGCUUACUGGUGGAAACUAAAUCC
..(((((..........((((.....)))).........((((........)))))))))..((((...((((((((..(((....)))..))))))))..)).))........... ( -28.00)
>DroYak_CAF1 138078 117 + 1
AAAGAACAUUCAUAAAUUUGUUUACGGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUCCCCUUUCUAAGCCCCAGUCACUCCUGAUCUGGGCUUACUGGAGGAAACUAAAUCC
...((((..........((((.....)))).........((((........))))))))((((((....(((((((..((((....))))..)))))))..)).))))......... ( -28.40)
>consensus
AAAGAACAUUCAUAAAUUUGUUUACUGCAAUCCAUUUCCGCAAAUCCACGCUUGCGUUCUUCCCCCUUCUAAACCCAAGUCACUCCUGAUCUUGGCUUACUGGAGGAAACUAAAUCC
.((((((..........((((.....)))).........((((........)))))))))).((((...((((((((.((((....)))).))))))))..)).))........... (-21.02 = -22.02 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:52 2006