Locus 590

Sequence ID 2L_DroMel_CAF1
Location 1,798,792 – 1,798,894
Length 102
Max. P 0.547975
window974

overview

Window 4

Location 1,798,792 – 1,798,894
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.75
Mean single sequence MFE -28.70
Consensus MFE -19.49
Energy contribution -20.30
Covariance contribution 0.81
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.68
SVM decision value 0.03
SVM RNA-class probability 0.547975
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1798792 102 + 22407834
UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGC------------------UAUUCC
((((.((((...((((.((..((((.(((....))).))))..))..))))......)))).)))).....(((..(((((((....)))))))))------------------)..... ( -26.00)
>DroSec_CAF1 6225 112 + 1
UGUGUCGGAGGAUGUGUCUCAGUAUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC-------CCUC-UAUUCC
......(((((.((((...((((((...((((.(((.......))).))))...))).))).))))...(((((..(((((((....))))))))))))...-------))))-)..... ( -31.60)
>DroSim_CAF1 930 112 + 1
UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC-------CCUC-UAUUCC
......(((((.((((.((..((((.(((....))).))))..))..))))..................(((((..(((((((....))))))))))))...-------))))-)..... ( -31.60)
>DroPer_CAF1 13785 111 + 1
---AU------CUGUAUCUCAGUGUGGGUUCGGGUUAACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUACUAUCCUGACACUGCCUCACAUCUC
---..------..........(((((((((((((.((..................((.((((.......)))).))(((((((....)))))))..)).)))))....))).)))))... ( -25.60)
>consensus
UGUGUCGGAGGAUGUGUCUCAGUGUGAGUAUGUGCUGACAUCAAGUUCAUAAAAAUAUCUGCCAUAAUUGCAGCUAAGUCAGCAAAUGUUGACUGCUGUCCC_______CCUC_UAUUCC
.(((((((...(((((.(((.....)))))))).)))))))..............((.((((.......)))).))(((((((....))))))).......................... (-19.49 = -20.30 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:29 2006