Locus 5899

Sequence ID 2L_DroMel_CAF1
Location 16,669,829 – 16,669,936
Length 107
Max. P 0.734461
window9358

overview

Window 8

Location 16,669,829 – 16,669,936
Length 107
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -20.61
Consensus MFE -12.34
Energy contribution -12.58
Covariance contribution 0.24
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value 0.43
SVM RNA-class probability 0.734461
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16669829 107 - 22407834
UACACGCCCCACUGCACACAAGCGUAACUAUAACAAUCCUCGCAUAAAUACUGUGGAGGUCAAAAUAAUAAUA---GUAAGUUAAGCAAUUGCAAAUUU-------UCCAGUAU--ACU
..........((((......(((...(((((......((((.((((.....))))))))...........)))---))..)))..((....))......-------..))))..--... ( -14.03)
>DroSec_CAF1 124461 103 - 1
UACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUCGAGGUCAAAAUAAUAAUAAUAGUAA----AACAUUUUCGGACUU-------UUCUUUAC-----
........((..(((((....)))))(((((......((((((((.....))).)))))..............)))))..----.........))....-------........----- ( -18.65)
>DroSim_CAF1 116315 107 - 1
AACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUCGAGGUCAAAAUAAUAAUAAUAGUAAGUUGAGCCAUUCCAAAUUU-------UCCAGUAU-----
.....((.(.(((((((....)))).(((((......((((((((.....))).)))))..............))))).))).).))............-------........----- ( -19.05)
>DroEre_CAF1 125587 114 - 1
CGCACACCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA---GUAAGUUGCGCCAUUGCGAAUAUGCUUAAAUCAAGUGU--GCC
.((((((.....(((((....)))))...........((((((((.....)))).))))..............---.(((((..(((....))).....)))))......))))--)). ( -29.20)
>DroYak_CAF1 124478 108 - 1
UAUACACCCGACUGCACACAAGUGCAACUACAACAAACCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA---AUAAGUUGAGCAAUGGCAAUUU--------UCAAGUAUUUAGC
.((((...(((((((((....))))...........(((((((((.....)))).))))).............---...))))).((....)).....--------....))))..... ( -22.10)
>consensus
UACACGCCCCACUGCACACAAGUGCAACUAUAACAAUCCUCGCAGAAAUACUGUGGAGGUCAAAAUAAUAAUA___GUAAGUUGAGCAAUUGCAAAUUU_______UCCAGUAU_____
............(((((....)))))...........((((((((.....)))).))))............................................................ (-12.34 = -12.58 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:46 2006