Locus 5872

Sequence ID 2L_DroMel_CAF1
Location 16,608,057 – 16,608,149
Length 92
Max. P 0.868964
window9321

overview

Window 1

Location 16,608,057 – 16,608,149
Length 92
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 80.97
Mean single sequence MFE -23.28
Consensus MFE -19.99
Energy contribution -19.68
Covariance contribution -0.31
Combinations/Pair 1.32
Mean z-score -1.77
Structure conservation index 0.86
SVM decision value 0.86
SVM RNA-class probability 0.868964
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16608057 92 + 22407834
GAGCAGGGUGGGCGUGGCGGCACACGCAUAUACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA
((((((((((.(((((......)))))...)))..))))))).....------..........-----------..................((((.(...).)))).. ( -24.30)
>DroSec_CAF1 63243 92 + 1
GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA
((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70)
>DroSim_CAF1 62460 92 + 1
GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA
((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70)
>DroYak_CAF1 62005 92 + 1
GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA
((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70)
>DroAna_CAF1 4630 100 + 1
AGGGGAAGUGGGCGUGG---UUCACGCAUAGAUUUCCUGCUUCCUCCAUCAUCACAACAAAAAAACGAAAAAUAAUAAAUAUUUUAGUAAAAUGCUG------AGCGAA
.(((((((..((((((.---..)))))...(....))..))))).))...................................((((((.....))))------)).... ( -21.00)
>consensus
GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU______ACUACAAAAA___________AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA
((((((((.(.(((((......))))).....).))))))))..................................................((((.(...).)))).. (-19.99 = -19.68 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:10 2006