Locus 5870

Sequence ID 2L_DroMel_CAF1
Location 16,601,447 – 16,601,547
Length 100
Max. P 0.742426
window9319

overview

Window 9

Location 16,601,447 – 16,601,547
Length 100
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -21.68
Consensus MFE -16.76
Energy contribution -16.48
Covariance contribution -0.28
Combinations/Pair 1.27
Mean z-score -1.77
Structure conservation index 0.77
SVM decision value 0.45
SVM RNA-class probability 0.742426
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16601447 100 - 22407834
--------AUUUAAGCCUAGAACAAAUCAGUUCAAAACGAUACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACGAACUGGCAGGUGUAA
--------......((((.((((......))))..............((((...((.((((...(((...((((.....))))..)))))))))..)))))))).... ( -23.00)
>DroSec_CAF1 56725 100 - 1
--------UUCUAAACCUAGAACAAAUCAGUUCAAAUCAACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA
--------...........((((......))))......(((((..(((((......((((...(((...((((.....))))..)))))))....)))))))))).. ( -22.90)
>DroSim_CAF1 55518 100 - 1
--------UUCUAAACCUAGAACAAAUCAGUUCAAAUCAACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA
--------...........((((......))))......(((((..(((((......((((...(((...((((.....))))..)))))))....)))))))))).. ( -22.90)
>DroEre_CAF1 57623 108 - 1
AUAACAUGUUCUAAACGUAGAAAAAUUCAGUUGAAAUCGACACUCAUGCUAAAAUCUGUUUAUAGACCAUUGUAAAGCUUAGCUUGUCGAACAAACUGGCAGGUGUAA
...((((.(((((....)))))....((((((....((((((.....(((((......(((((((....)))))))..))))).))))))...))))))...)))).. ( -19.90)
>DroYak_CAF1 55347 108 - 1
AUAAAAUGCUUUGAACGUAGAACAUAUCAGUUGCAAUCGACACUCUUGCCAAAAUCUGUUUAUAGACCAUUGUGAAGCUCACCUUGUCAAACGAACUGGCAGGUGUAG
......(((.((((............))))..)))......((.(((((((...((.((((...(((.(..(((.....)))..))))))))))..))))))).)).. ( -19.70)
>consensus
________UUCUAAACCUAGAACAAAUCAGUUCAAAUCGACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA
.........((((....))))..................(((((..(((((.....(((((...(((...((((.....))))..))))))))...)))))))))).. (-16.76 = -16.48 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:08 2006