Locus 587

Sequence ID 2L_DroMel_CAF1
Location 1,786,904 – 1,787,020
Length 116
Max. P 0.794845
window967 window968

overview

Window 7

Location 1,786,904 – 1,787,020
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 93.68
Mean single sequence MFE -23.37
Consensus MFE -20.97
Energy contribution -21.31
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -2.10
Structure conservation index 0.90
SVM decision value 0.60
SVM RNA-class probability 0.794845
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1786904 116 + 22407834
CUUUCACACUUUUCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGAAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCUGCGAAAUCGAGCUGACUGUCCAUUUAUUGUAAUU
.....(((.......(((((..(((((....(((........)))(((((((((((......)))))(((....)))..)))).))....)))))..))))).......))).... ( -24.24)
>DroSec_CAF1 43814 116 + 1
CUUUCACACUUUUCUGACAGCAAGCGCACCUCAAUUUAUAAUUUGUGCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCCACAAAAUCGGGCUGACUGUCCAUUUAUUGUAAUU
.....(((.......(((((..(((.(................((.((.(((((((......))))))).))))((....))........).)))..))))).......))).... ( -23.44)
>DroYak_CAF1 55049 116 + 1
CUUUCACACUCUCCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUGCCACAAAAUCGGGCUGACUGUUCAUUUAUUGUAAUU
.....(((.......(((((..(((((...........(((((((.....)))))))..........(((....))).............)))))..))))).......))).... ( -22.44)
>consensus
CUUUCACACUUUUCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCCACAAAAUCGGGCUGACUGUCCAUUUAUUGUAAUU
.....(((.......(((((..(((((...........(((((((.....)))))))..........(((....))).............)))))..))))).......))).... (-20.97 = -21.31 +   0.34)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 8

Location 1,786,904 – 1,787,020
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 93.68
Mean single sequence MFE -32.83
Consensus MFE -26.05
Energy contribution -26.61
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.75
Structure conservation index 0.79
SVM decision value 0.46
SVM RNA-class probability 0.745829
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1786904 116 - 22407834
AAUUACAAUAAAUGGACAGUCAGCUCGAUUUCGCAGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUUCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGAAAAGUGUGAAAG
..(((((.......((((((.(((((.(((((.(((.....))).(((.(((((......))))).)))...............)))))))))).)))))).......)))))... ( -30.44)
>DroSec_CAF1 43814 116 - 1
AAUUACAAUAAAUGGACAGUCAGCCCGAUUUUGUGGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGCACAAAUUAUAAAUUGAGGUGCGCUUGCUGUCAGAAAAGUGUGAAAG
..(((((.......((((((.((((((......)))...((((.((((((((((......)))))))))).(((........)))))))..))).)))))).......)))))... ( -35.54)
>DroYak_CAF1 55049 116 - 1
AAUUACAAUAAAUGAACAGUCAGCCCGAUUUUGUGGCAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGGAGAGUGUGAAAG
...............(((.((.(((((....)).)))...((((((((((((((((((((((((((.....)))))))...))))))))....))))))))))).)).)))..... ( -32.50)
>consensus
AAUUACAAUAAAUGGACAGUCAGCCCGAUUUUGUGGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGAAAAGUGUGAAAG
..(((((.......((((((.((((((......)))...((((..(((((((((......)))))))))..(((........)))))))..))).)))))).......)))))... (-26.05 = -26.61 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:23 2006