Locus 5869

Sequence ID 2L_DroMel_CAF1
Location 16,601,101 – 16,601,198
Length 97
Max. P 0.760049
window9318

overview

Window 8

Location 16,601,101 – 16,601,198
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.54
Mean single sequence MFE -20.20
Consensus MFE -17.21
Energy contribution -17.21
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.85
SVM decision value 0.50
SVM RNA-class probability 0.760049
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16601101 97 - 22407834
GGCCCAGAAUGCCGAUGGACAAGUGUGUGUGUGUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC
((((((..((((..(((.((....)).)))..)))).))))))....................(((....((((.......))))...)))...... ( -21.90)
>DroSec_CAF1 56386 95 - 1
GGCCCAGAAUGCCGAUGGACAAGUGUGUGU--GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC
((((((..((((..(((.((....)).)))--)))).))))))....................(((....((((.......))))...)))...... ( -20.60)
>DroSim_CAF1 55181 95 - 1
GGCCCAGAAUGCCGAUGGACAAGUGUGUGU--GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC
((((((..((((..(((.((....)).)))--)))).))))))....................(((....((((.......))))...)))...... ( -20.60)
>DroEre_CAF1 57300 89 - 1
GGCCCAGAAUGCCGAUGGACAAGUGUG--------UGUGGGCCAAACAGAUAAAGGAGAUGAAGACGUGGAAGCAAAAUGAGUUUAAAGUCAAUAAC
((((((..(((((.........).)))--------).))))))....................(((....((((.......))))...)))...... ( -18.60)
>DroYak_CAF1 55008 89 - 1
GGCCCAGAAUGCCGAUGGACAAGUGUG--------UGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC
((((((..(((((.........).)))--------).))))))....................(((....((((.......))))...)))...... ( -19.30)
>consensus
GGCCCAGAAUGCCGAUGGACAAGUGUGUGU__GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC
((((((.(..........((....)).........).))))))....................(((....((((.......))))...)))...... (-17.21 = -17.21 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:07 2006