Locus 5868

Sequence ID 2L_DroMel_CAF1
Location 16,599,378 – 16,599,468
Length 90
Max. P 0.530281
window9317

overview

Window 7

Location 16,599,378 – 16,599,468
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.02
Mean single sequence MFE -18.82
Consensus MFE -15.32
Energy contribution -15.16
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.35
Structure conservation index 0.81
SVM decision value -0.01
SVM RNA-class probability 0.530281
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16599378 90 - 22407834
AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGUACAU------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG
.((.((((((..((((((.....))))))((((((.....------.(((((((...))))))).......)))))).......))))))..)).. ( -20.02)
>DroSec_CAF1 54677 86 - 1
AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU----------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG
.((.((((((..((((((.....))))))((((((.----------.(((((((...))))))).......)))))).......))))))..)).. ( -18.40)
>DroSim_CAF1 53471 86 - 1
AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU----------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG
.((.((((((..((((((.....))))))((((((.----------.(((((((...))))))).......)))))).......))))))..)).. ( -18.40)
>DroEre_CAF1 55523 82 - 1
AUCCAUGCCAAAGUUUGCCAUGAGUAAGCGAUU--------------UAUUCAAAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCAAGA
....((((((..((((((.....))))))((((--------------((((((.....))))))))))................))))))...... ( -18.80)
>DroYak_CAF1 53269 96 - 1
AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUAUACAUACAUAUAUAUUCAGAUUCCGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG
.((.((((((..((((((.....))))))((((((((......))))))))........(((.......)))............))))))..)).. ( -18.50)
>consensus
AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU__________AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG
....((((((..((((((.....))))))..............................(((.......)))............))))))...... (-15.32 = -15.16 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:06 2006