Locus 5850

Sequence ID 2L_DroMel_CAF1
Location 16,571,107 – 16,571,205
Length 98
Max. P 0.846881
window9282

overview

Window 2

Location 16,571,107 – 16,571,205
Length 98
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 92.36
Mean single sequence MFE -16.62
Consensus MFE -13.80
Energy contribution -13.76
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.83
SVM decision value 0.77
SVM RNA-class probability 0.846881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16571107 98 - 22407834
ACGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUUGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC
............((((.((((((.....((((..((((........)))).....)))).-------..(....).))))))....))))............... ( -16.90)
>DroSec_CAF1 26021 98 - 1
AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC
............((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....))))............... ( -14.50)
>DroSim_CAF1 24114 98 - 1
AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC
............((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....))))............... ( -14.50)
>DroEre_CAF1 25567 98 - 1
AAGCCUUUAGCCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUGCCAUUUAUUAGCC-------CACACACGAGCACUCCUUCAUGCUGCUAUCUAAUCUAC
.......((((.((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....)))).)))).......... ( -20.00)
>DroYak_CAF1 25500 105 - 1
AUGCCUUUGGCCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUGCCAUUUAUUAGCCAACACACCACACACGAGCAGUCCAUCAUGCUUCUAUCUAAUCUCC
......(((((......((.(((.....))).))((((........)))).......)))))............(((((........)))))............. ( -17.20)
>consensus
AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC_______CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC
............((((.((((((.....(((((.((((........))))...))).))..........(....).))))))....))))............... (-13.80 = -13.76 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:32 2006