Locus 5848

Sequence ID 2L_DroMel_CAF1
Location 16,570,430 – 16,570,528
Length 98
Max. P 0.590467
window9280

overview

Window 0

Location 16,570,430 – 16,570,528
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.13
Mean single sequence MFE -20.05
Consensus MFE -15.63
Energy contribution -15.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.11
SVM RNA-class probability 0.590467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16570430 98 + 22407834
---UCUGGCUUUAUUCCCACAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCGUUUUGGGGCUAAAUCAACUGUAAAAAAUUCG
---..(((.((((..(((.((((((-..........((((((.(((....))).))))))..........))))))))).)))))))............... ( -21.05)
>DroPse_CAF1 32058 84 + 1
UC-CUUGGCU-----CGCGUA------------GGCCUUUGAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
..-...((((-----......------------)))).((((..((((..(((((((((.......))))).))))..))))..)))).............. ( -18.60)
>DroSim_CAF1 23427 98 + 1
---UCUGGCUAUAUUCCCACAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCGUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
---............(((.((((((-..........((((((.(((....))).))))))..........)))))))))....................... ( -19.85)
>DroEre_CAF1 24847 102 + 1
UCCUCUGGCUUGAUUCCCACAGAAUUUUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUACUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
.....(((........)))..(((((((...((((.((((((.(((....))).))))))..((((........))))..........))))..))))))). ( -23.50)
>DroYak_CAF1 24829 98 + 1
---CCUGGCUAUAUUCCCAUAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
---..(((........)))......-.....((((.((((((.(((....))).)))))).(((((........))))).........)))).......... ( -18.70)
>DroPer_CAF1 33618 84 + 1
UC-CUUGGCU-----CUCGUA------------GGCCUUUGAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
..-...((((-----......------------)))).((((..((((..(((((((((.......))))).))))..))))..)))).............. ( -18.60)
>consensus
___CCUGGCU_UAUUCCCACAAAAU_UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA
.....((((............................(((((.(((....))).)))))...((((........)))))))).................... (-15.63 = -15.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:30 2006