| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,551,315 – 16,551,413 |
| Length | 98 |
| Max. P | 0.865948 |
| Location | 16,551,315 – 16,551,413 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.24 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.83 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16551315 98 + 22407834 AUUUCUGAGUGGGAACAUGCAAUCUUUGCAGUAAGCGAACUUGCAGAGCAAAAAACCUCACCUUAGUUAAGCUUAAUGAAUUGUUAAAUUUUGUAAAU---------------- .....(((((...(((.(((((..(((((.....))))).)))))(((........)))......)))..))))).......................---------------- ( -16.30) >DroSec_CAF1 5776 114 + 1 AUAUCUGAGUGGGAACAUGCAAUCUUCGCAGUAAGCGAACUUGCAGGGAAAAACAUCUCACCUUUGCAAAGUUGAAUAAAAGUUUAAAUUUUGUAAAAAAAAAUACUGAAUGGU .....(.((((((....(((((..(((((.....))))).)))))((((......)))).))(((((((((((((((....)))).)))))))))))......)))).)..... ( -25.30) >DroSim_CAF1 5746 114 + 1 AUAUCUGAGUGGAAACAUGCAAUCUUCGCAGUAAGCGAACUUGCAGGGAAAAACAUCUCACUUUUGCAAAAUUAAAUAAAAGGUUAAAUUUUGUAAAAAAAAAUACUGAAUGGU ........(((....)))((((..(((((.....))))).)))).((((......))))..((((((((((((.(((.....))).))))))))))))................ ( -25.30) >consensus AUAUCUGAGUGGGAACAUGCAAUCUUCGCAGUAAGCGAACUUGCAGGGAAAAACAUCUCACCUUUGCAAAGUUAAAUAAAAGGUUAAAUUUUGUAAAAAAAAAUACUGAAUGGU .....((((((....))(((((..(((((.....))))).)))))...........))))..(((((((((((.(((.....))).)))))))))))................. (-17.16 = -17.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:07 2006