Locus 583

Sequence ID 2L_DroMel_CAF1
Location 1,781,305 – 1,781,405
Length 100
Max. P 0.791687
window960

overview

Window 0

Location 1,781,305 – 1,781,405
Length 100
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 74.85
Mean single sequence MFE -31.85
Consensus MFE -15.64
Energy contribution -18.07
Covariance contribution 2.44
Combinations/Pair 1.22
Mean z-score -2.22
Structure conservation index 0.49
SVM decision value 0.59
SVM RNA-class probability 0.791687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1781305 100 + 22407834
AGUGCAAAUAUUUUCG-------------ACCGAUUUAGCGCUUCAUUUGCCUGGGUGGCCGUGACCGGGAGGGGCGUGGCAGUUUGUUAUUCUUUGAUAUGCUAAAUUGGUG
................-------------((((((((((((..(((...((....)).((((((.((....))..))))))..............)))..)))))))))))). ( -29.80)
>DroPse_CAF1 45113 108 + 1
UGUGCAAAUAUUUUCCCACUUCGUUUUGCCCCGUUUUUGCACUUCAUUUGUGUUUGAAGGGG-----AAGAGGGGAGUGGCUGUUUGCUUUUCUUUGAUAUGCGAAAUUUAUG
...(((((((.....(((((((.((((.((((.(((..((((.......))))..)))))))-----.)))).))))))).)))))))......................... ( -33.30)
>DroSec_CAF1 38164 100 + 1
AGUGCAAAUAUUUUCG-------------ACCGAUUUUGCACUUCAUUUGCCUGGGAGGGCGUGUCCGGGAGGGACGUGGCAGUUUGUUUUUCUUUGAUGUGCUAAAUUGGUG
................-------------((((((((.((((.......((((....))))..(((..(((((((((........)))))))))..))))))).)))))))). ( -31.00)
>DroPer_CAF1 43716 108 + 1
UGUGCAAAUAUUUUCCCACUUCGUUUUGCCCCGUUUUUGCACUUCAUUUGUGUUUGAAGGGG-----AAGAGGGGAGUGGCUGUUUGCUUUUCUUUGAUAUGCGAAAUUUAUG
...(((((((.....(((((((.((((.((((.(((..((((.......))))..)))))))-----.)))).))))))).)))))))......................... ( -33.30)
>consensus
AGUGCAAAUAUUUUCC_____________ACCGAUUUUGCACUUCAUUUGCCUGGGAAGGCG_____AAGAGGGGAGUGGCAGUUUGCUUUUCUUUGAUAUGCGAAAUUGAUG
.............................(((((((((((((((((........))))).........(((((((((..(....)..)))))))))....)))))))))))). (-15.64 = -18.07 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:15 2006