| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,777,870 – 1,777,960 |
| Length | 90 |
| Max. P | 0.653888 |
| Location | 1,777,870 – 1,777,960 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.19 |
| Mean single sequence MFE | -16.77 |
| Consensus MFE | -9.20 |
| Energy contribution | -8.82 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1777870 90 + 22407834 AAAGCGAAUGAA-AA-GAACAUGGAAAACUGCUGCAAUUUGUUGCAAAAACAAAGAAAGUUUCG-CUUGUCGAAAA-----GGAAAUGCAACAAAGUA---------------------- ..((((......-..-.............))))....(((((((((.............((((.-(((......))-----))))))))))))))...---------------------- ( -12.31) >DroPse_CAF1 40526 114 + 1 AAAGCAAAUGAA-AACGAACAUGAAAAGCUGCCGCAAUUUGUUGUAAAAACAAAGAAAACUUUUCCAAACUGGAAG-----GGAAAUGCAACAAAGUGAGUGCCAAAGAGUGGGGGAGAA ............-...............((.(((((.((((((.....)))))).....(((((((.....)))))-----))...))).............(((.....))))).)).. ( -20.90) >DroSec_CAF1 34829 90 + 1 AAAGCAAAUGAA-AA-GAACAUGGAAAACUGGCGCAAUUUGUUGCAAAAACAAAGAAAGUUUCG-CUUGUCGAAAA-----GGAAAUGCAACAAAGUA---------------------- ............-..-.....................(((((((((.............((((.-(((......))-----))))))))))))))...---------------------- ( -11.71) >DroYak_CAF1 45866 90 + 1 AAAGCAAAUGGA-AA-GAACAUGGAAAACUGCCGCAAUUUGUUGCAAAAACAAAGAAAGUUUCG-CUUGUCGGAAA-----GGAAAUGCAACAAAGUA---------------------- ...((..(((..-..-...)))((.......))))..(((((((((.............((((.-(((......))-----))))))))))))))...---------------------- ( -15.01) >DroAna_CAF1 35461 96 + 1 GAUGAGAAUGCAAAG-GAAAAUGUAAAGCUGCCGCAAUUUGUUGCAAAAACAAAGAAAGUUUUU-CAUUCCGAAGAGGAAGGGAAAUGCAACAAAGUA---------------------- ........((((...-.....))))..((....))..(((((((((.((((.......))))((-(.((((.....))))..))).)))))))))...---------------------- ( -18.50) >DroPer_CAF1 39441 114 + 1 GAAGCAAAUGAA-AAGGAACAUGAAAAGCUGCCGCAAUUUGUUGCAAAAACAAAGAAAACUUUUCCAAACUGGAAG-----GGAAAUGCAACAAAGUGAGUGCCAAAGAGUGGGGGAGAA ............-...............((.((((..(((((((((....(...)....(((((((.....)))))-----))...)))))))))((....))......)))).)).... ( -22.20) >consensus AAAGCAAAUGAA_AA_GAACAUGGAAAACUGCCGCAAUUUGUUGCAAAAACAAAGAAAGUUUCG_CAUGCCGAAAA_____GGAAAUGCAACAAAGUA______________________ .....................................(((((((((.............((((........))))...........)))))))))......................... ( -9.20 = -8.82 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:14 2006