| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,776,732 – 1,776,834 |
| Length | 102 |
| Max. P | 0.989745 |
| Location | 1,776,732 – 1,776,834 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Mean single sequence MFE | -18.15 |
| Consensus MFE | -10.83 |
| Energy contribution | -10.62 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.60 |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.989745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1776732 102 - 22407834 AUAUCCUUUCUGAUUUCCCCCACGGAUGACA-CUCACUUUGCAUAUCCUUACU---CUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .....................(((((.((((-((((((...............---............................))))).))))).)))))..... ( -16.13) >DroSec_CAF1 33732 103 - 1 AUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACU---CUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU .....................(((((.(((((.(((((...............---............................))))).))))).)))))..... ( -15.33) >DroAna_CAF1 34005 99 - 1 AUAUCCUUCCUGCU--CCUCGCCGCUCGACAUUUCGGUUUACAUAUCCUUGUGGGGCUUCGC----UGAAUUUCCUCCAUUUCUGGUAACAUGUUCGGCGU-UAUU ...........(((--((..((((..........))))..(((......))))))))..(((----(((((.....(((....)))......)))))))).-.... ( -23.00) >consensus AUAUCCUUUCUGAUUUCCCCCACGGAUGACAUCUCACUUUACAUAUCCUUACU___CUUCCCCACUUAAAUUUCCUUCAUUUCUGGUGACGUGUUUUCCGUUUAUU ......................((((.(((((.(((((..............................................))))).))))).))))...... (-10.83 = -10.62 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:13 2006