| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,457,658 – 16,457,751 |
| Length | 93 |
| Max. P | 0.998361 |
| Location | 16,457,658 – 16,457,751 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 74.00 |
| Mean single sequence MFE | -18.72 |
| Consensus MFE | -9.00 |
| Energy contribution | -10.00 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.48 |
| SVM decision value | 3.08 |
| SVM RNA-class probability | 0.998361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16457658 93 + 22407834 AAAAAAGGAAGAAAUCUGAAAAGAAAUA--UGAA------AAUAAAAAAAAAAUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUCCUUGAGCCGAAAA---------- ......((((....(((....)))..((--(...------.))).........))))..........((.(((((....)))))((((...)))).))...---------- ( -19.70) >DroEre_CAF1 79370 90 + 1 A--AAAGGAAGAAAUCUGAAAAGAAAUAUAUAAA------AGUAAA--AAA-AUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUUCCUCAACCGAAAA---------- .--..((((((...(((....)))..........------......--..(-((((.....)))))....(((((....))))).))))))..........---------- ( -19.30) >DroYak_CAF1 84393 92 + 1 A--AAAGGAAGAAAUCUGAAAAGAAAUA--UGAA------AAUAAA--AAA-AUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUCCUUCAACCGAAAA------CCUA .--...((((....(((....)))..((--(...------.)))..--...-.))))..(((((......(((((....))))).....))))).......------.... ( -17.90) >DroAna_CAF1 75786 89 + 1 ----------GAAA-UUGAAAAGAAAUA--UGGAUGGAAAAAAUAA--AAA-AUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUCCUCAAGACCAAAA------UUAA ----------....-.............--(((.(((((.......--...-.)))))(((((...((..(((((....)))))))...))))).)))...------.... ( -19.00) >DroPer_CAF1 55476 95 + 1 ---AAGGGAAAAAA----AAAAGAUAUA--UAAG------AAGAAAAAAAA-AUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUCCUUGAACAUCGAGCAAAAAACAA ---.(((((.....----....((((..--((((------..(((......-.)))..))))...)))).(((((....)))))..))))).................... ( -17.70) >consensus A__AAAGGAAGAAAUCUGAAAAGAAAUA__UGAA______AAUAAA__AAA_AUUCCACUUGAAUUGUCAGCCGGCAUGCUGGCGCUCCUUCAACCGAAAA_________A ....(((((...................................................(((....)))(((((....)))))..))))).................... ( -9.00 = -10.00 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:19 2006