Locus 5791

Sequence ID 2L_DroMel_CAF1
Location 16,403,720 – 16,403,810
Length 90
Max. P 0.500000
window9182

overview

Window 2

Location 16,403,720 – 16,403,810
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 88.01
Mean single sequence MFE -26.28
Consensus MFE -21.11
Energy contribution -22.07
Covariance contribution 0.96
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.80
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16403720 90 - 22407834
AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGA-GCUAA-AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
(((....(((.....))).((((((.....))))))-)))..-..(((((.....)))))(((((((((.....))).))))))........ ( -28.80)
>DroSec_CAF1 28121 91 - 1
AGCAAAACGCAAACUGCGAUCAAGAAGUGGUCUUGA-GCUAAAAGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
(((....(((.....))).((((((.....))))))-))).....(((((.....)))))(((((((((.....))).))))))........ ( -29.20)
>DroSim_CAF1 27129 91 - 1
AGCAAAACGCAAACUGCGAUCAAGAAGUGGUCUUGA-GCUAAAAGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
(((....(((.....))).((((((.....))))))-))).....(((((.....)))))(((((((((.....))).))))))........ ( -29.20)
>DroEre_CAF1 23960 73 - 1
AGCAAAACGCAAACGGCGAUCGAGAAGUGCUCUUGA-GCCAA-A-----------------AGCAUCAGGUUCUCUGCAUGCCUGUCACGUA
......(((...(((((..((((((.....))))))-)))..-.-----------------.(((((((.....))).))))..))..))). ( -17.30)
>DroYak_CAF1 28923 91 - 1
AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGAAGCCAA-AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
.((.....))....(((..((((((.....)))))).)))..-..(((((.....)))))(((((((((.....))).))))))........ ( -30.10)
>DroAna_CAF1 23577 91 - 1
AGCAAAACGCAAACGGCGAUCAAGAAGUGGACUCGGAGCUAA-AGCCACAGCCAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
.((....(((.....)))........((((.((.........-)))))).))...((.(.(((((((((.....))).)))))).).))... ( -23.10)
>consensus
AGCAAAACGCAAACGGCGAUCAAGAAGUGGUCUUGA_GCUAA_AGCCAACGCAAAGUUGGAGGCAUCAGGUUUUCUGCAUGCCUGUCACGUA
.((....(((.....))).((((((.....)))))).))......(((((.....)))))(((((((((.....))).))))))........ (-21.11 = -22.07 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:58 2006