Locus 5773

Sequence ID 2L_DroMel_CAF1
Location 16,391,121 – 16,391,241
Length 120
Max. P 0.701022
window9142

overview

Window 2

Location 16,391,121 – 16,391,241
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.88
Mean single sequence MFE -32.58
Consensus MFE -26.52
Energy contribution -27.04
Covariance contribution 0.52
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.81
SVM decision value 0.35
SVM RNA-class probability 0.701022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16391121 120 + 22407834
GGCGUCGGCGGAAUUUUCUGUCGACUUUGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGCGUU
.(((((((((((....)))))))))((((((...((..(((((...(((....)))...(((.......)))...)))))..))...))))))((((((.....)))))).....))... ( -34.20)
>DroSec_CAF1 15701 119 + 1
GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGAGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU
(((((((((((...-..)))))))).((((((.((....))...)))))).........)))...(((((.((((...(((((((((......))))))).))...))).).)))))... ( -32.40)
>DroSim_CAF1 12715 119 + 1
GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU
(((((((((((...-..)))))))).((((((.((....))...)))))).........)))...(((((.((((...(((((((((......))))))).))...))).).)))))... ( -32.40)
>DroEre_CAF1 12453 114 + 1
GGCGUCGGCGGAAU-UUCUGUCGCCUGGGAUUUUCAGCAGACGUAAUCCUUGGGGAAAUGCC-AGAUUUG----UUGUCUGAUGUGUGUUUAAAUGCAUUAAGUGUGUGUAGUAGGUGUU
.((((((((((...-..)))))((.(((.....))))).)))))..(((....)))((((((-((((...----..))))(((((((......)))))))..............)))))) ( -28.60)
>DroYak_CAF1 16095 119 + 1
GGCGUCGGCGGAAU-UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUACCUAAAUUUGGUUAUUGUCUGAUGUGUGUUGAAAUACAUUAAGUGAAUGUAGUAGGUGUU
...((((((((...-..)))))))).((((((.((....))...))))))......((((((((.......(((((...((((((((......)))))))))))))......)))))))) ( -35.32)
>consensus
GGCGUCGGCGGAAU_UUCUGUCGACUGGGAUUUUCAGAAGACGUAAUCCCUGGGGAAAUGCCUAAAUUUGGUUAUUGUCUGAUGUGUGUUAAAAUACAUUAAGUGUGUGUAGUAAGUGUU
((((((((((((....))))))))).((((((.((....))...)))))).........))).................((((((((......))))))))................... (-26.52 = -27.04 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:20 2006