Locus 577

Sequence ID 2L_DroMel_CAF1
Location 1,768,991 – 1,769,087
Length 96
Max. P 0.737479
window950

overview

Window 0

Location 1,768,991 – 1,769,087
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.38
Mean single sequence MFE -15.12
Consensus MFE -9.21
Energy contribution -9.85
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 0.44
SVM RNA-class probability 0.737479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1768991 96 - 22407834
GAGGAAGGCCUCCUCCUUCAUCUUAACAUUUUCAAAUCUGAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU
((.(((((......))))).)).......................................((((((((..(((....)))...)))))))).... ( -14.90)
>DroSec_CAF1 25973 96 - 1
GAGGAAGGCCACCUCCUCCAUCUAACCAUUUUCAAAUCUUAUUUUCCCACAUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU
(((((.((...)))))))...........................................((((((((..(((....)))...)))))))).... ( -15.50)
>DroSim_CAF1 28302 96 - 1
GAGGAAGGCCACCUCCUCCAUCUUACCAUUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU
(((((.((...)))))))...........................................((((((((..(((....)))...)))))))).... ( -15.50)
>DroEre_CAF1 25815 95 - 1
GAGGAAAGGCUUCUCCUGCAUUCUCCCGAUUUGAAAUCCUAUUUUGCCACCUGUUUCUAUUUUCCGAUUCC-UGACACCAAUUCAAUCGGAGUUUU
.(((...(((..........(((.........)))..........))).))).........(((((((...-(((.......)))))))))).... ( -12.75)
>DroYak_CAF1 34963 96 - 1
GAGGAAUCCCUUUUCCUUCAUUCUCCUCAUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACGCAAAUUCAAUCGGAGUUUU
((((((......))))))...........................................(((((((....(((.......)))))))))).... ( -12.00)
>DroAna_CAF1 25283 89 - 1
--AACAGGCC-----UUCCAGGUUUCCCAUUCCAAUUUAUAUUUUUCUGGUGGUUUGUGUUUUUCGAUUCCUUGACACCAAUUCAAUCGGAGACCC
--.(((((((-----..(((((.......................))))).)))))))..(((((((((..(((....)))...)))))))))... ( -20.10)
>consensus
GAGGAAGGCCUCCUCCUCCAUCUUACCAAUUUCAAAUCUUAUUUUCCCACCUGUUUUUAUUUUCCGAUUCCUUGACACCAAUUCAAUCGGAGUUUU
(((((........)))))...........................................((((((((..(((....)))...)))))))).... ( -9.21 =  -9.85 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:06 2006