Locus 5765

Sequence ID 2L_DroMel_CAF1
Location 16,386,743 – 16,386,837
Length 94
Max. P 0.555985
window9132

overview

Window 2

Location 16,386,743 – 16,386,837
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -26.48
Consensus MFE -19.53
Energy contribution -19.12
Covariance contribution -0.41
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.74
SVM decision value 0.04
SVM RNA-class probability 0.555985
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16386743 94 + 22407834
CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--UUCGUUUAAGGGUGUUCCAG-----------------------
(((.(((....((((...)))).....(((((((((((.....((.((((((....))))))))...))))-)..--.......))))))))).)))----------------------- ( -23.50)
>DroSec_CAF1 10267 94 + 1
CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--CUCCCUUGAGUGUGUUCCAG-----------------------
..((((((...(((..(((.((.....)).)))....)))))))))((((((....))))))........(-(((--(((....)))))))......----------------------- ( -26.40)
>DroSim_CAF1 8379 94 + 1
CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC-AUA--CUCGUUUGAGGGUGUUCCAG-----------------------
(((.((((((..((.(((((((.((((((.........))))))))((((((....)))))).........-..)--))))..))..)))))).)))----------------------- ( -26.10)
>DroEre_CAF1 8415 91 + 1
CUGCAACAUUUGCAUUGAGUGCUAACGGCCCAUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUCCACA--CUC----GAGGGUGUUCCAG-----------------------
(((.((((((....(((((((.(((((((.........))))))).((((((....))))))...........))--)))----)).)))))).)))----------------------- ( -24.40)
>DroYak_CAF1 11641 94 + 1
CUGCAGCAUUUGCAUUGAGUGCUAACGGCCUUCUGAUUGUUGUUGCAACUGCUGUUGCAGUUUAUAAAAUC-AUG--CUCGUCUGAGAAUGUUCCAG-----------------------
(((.((((((..((.(((((((.((((((.........))))))))((((((....)))))).........-..)--))))..))..)))))).)))----------------------- ( -26.00)
>DroAna_CAF1 7635 119 + 1
GUGCAACAUUUGCAUUGAGUGCUAACGGCCUUUUCAUUGUUGUUGCAACUGCUGUUGCACUUCAUAAAAUC-AGAGAUUGCUAGCUGGGUGUUCCGGGUUACAGGACAUUCGGACAUAAA
..((((..((((.(((((((((.((((((..((.((.......)).))..)))))))))))).....))))-)))..))))..(((((((((((.(.....).)))))))))).)..... ( -32.50)
>consensus
CUGCAACAUUUGCAUUGAGUGCUAACGGCCCUUUGAUUGUUGUUGCAACUGCUGUUGCAGUUCAUAAAAUC_AUA__CUCGUUUGAGGGUGUUCCAG_______________________
((((((((...(((.....(((.((((((.........)))))))))..)))))))))))............................................................ (-19.53 = -19.12 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006