| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,374,742 – 16,374,836 |
| Length | 94 |
| Max. P | 0.750681 |
| Location | 16,374,742 – 16,374,836 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.41 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -11.85 |
| Energy contribution | -12.16 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16374742 94 + 22407834 AUAUUUCACAUACUCAUAUGAGUGUGUGAUGGUCUAUCUGUGAACCAUCCGA-----CGACCACCUCGUCUGAGUUUUACACAACUUUUGCCUAUAAUC- .....((((((((((....)))))))))).(((.....((((((...((.((-----(((.....))))).))..))))))........))).......- ( -26.62) >DroSim_CAF1 50601 92 + 1 AUAUUUCACAUACCCAUAUGAGU--GUGAUGGUCUAUCUGUGAACCACCCGA-----CGACCACCUCGUCUGAGUUUUACACAACUUUUGCCUAUAAUC- .....((((((.(......).))--)))).(((.....((((....(((.((-----(((.....))))).).))....))))......))).......- ( -16.00) >DroEre_CAF1 50473 79 + 1 AUAUUUCACAUGCUCACAGGAGU--GCGAUGGUCUA-------------------GCCGACCAGCUCGUCUGAGUUUUAUACAACUUUUGCCUAUAAUCC ...........(((((.(.((((--....(((((..-------------------...))))))))).).)))))......................... ( -16.40) >DroYak_CAF1 50941 97 + 1 AUAUUUCACAUACUCAUAUGAGU--GUGAUGGUCUAUCUCUGAAUCACCCGACCAUCCGACCACCUCGUCUGAGUUUUACACAACUUUUGCCUAUAAUC- ...........(((((.((((((--(.(((((((................)))))))....)).))))).)))))........................- ( -19.29) >consensus AUAUUUCACAUACUCAUAUGAGU__GUGAUGGUCUAUCUGUGAACCACCCGA_____CGACCACCUCGUCUGAGUUUUACACAACUUUUGCCUAUAAUC_ .....((((..((((....))))..))))(((((........................)))))....((..(((((......)))))..))......... (-11.85 = -12.16 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:46 2006