Locus 575

Sequence ID 2L_DroMel_CAF1
Location 1,768,157 – 1,768,254
Length 97
Max. P 0.685996
window947

overview

Window 7

Location 1,768,157 – 1,768,254
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.64
Mean single sequence MFE -18.48
Consensus MFE -13.01
Energy contribution -13.70
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.70
SVM decision value 0.32
SVM RNA-class probability 0.685996
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1768157 97 + 22407834
UAUAGUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACC-----------UCUCCACU-----------CC
....((...((((((((((...((.(((....))).-))....))))).....)))))..))....((((((................-----------..))))))-----------.. ( -16.77)
>DroPse_CAF1 28354 118 + 1
UAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU--UUUAGUGCUGCUCCCAGAACCCGCAUGAAGUGGACAUCUCCUCCUCUUCCAUCCUCAUCCUCAUCCACACCCAUCCCCGUCC
...(((((((....(((((...((.(((....))).--))...)))))....))))))).....((((.(((.......))).))))................................. ( -20.60)
>DroSec_CAF1 25185 97 + 1
UAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUUAGUGCUACUCCCAGUGCCCGCAUGAAGUGACCAUAUCCUCCUCCACU-----------CCUCCACA-----------GU
((((((...((((((((((...((.(((....))).-))....))))).....))))).(((.....)))))))))............-----------........-----------.. ( -17.80)
>DroSim_CAF1 27469 98 + 1
UAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACU-----------CCUCCACU-----------GC
..(((....((((((((((...((.(((....))).)).....))))).....)))))........((((((..........))))))-----------...)))..-----------.. ( -18.00)
>DroEre_CAF1 24955 94 + 1
UAUGCUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACU-----------UUUCCAC--------------
.((((....((((((((((...((.(((....))).-))....))))).....)))))..)))).(((((((..........))))))-----------)......-------------- ( -20.30)
>DroYak_CAF1 34126 86 + 1
UAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCAC---------------------------------
((((.....((((((((((...((.(((....))).-))....))))).....)))))((((.....)))).))))...........--------------------------------- ( -17.40)
>consensus
UAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU_UUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACU___________CCUCCAC_____________C
..(((..((((.....)))).....((((.((((.......))))..)))))))(((.((((.....)))).)))............................................. (-13.01 = -13.70 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:03 2006