Locus 5743

Sequence ID 2L_DroMel_CAF1
Location 16,352,596 – 16,352,704
Length 108
Max. P 0.798615
window9098

overview

Window 8

Location 16,352,596 – 16,352,704
Length 108
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 86.44
Mean single sequence MFE -26.08
Consensus MFE -18.61
Energy contribution -18.69
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -2.09
Structure conservation index 0.71
SVM decision value 0.61
SVM RNA-class probability 0.798615
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16352596 108 - 22407834
CUACAUCGAUAGUCACAAAGUAUUGAAACGCCUAUCGAACUAUCGAGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUUUUUUUAGCAAAAUAUAAGCCGCAUCUC
.....((((((((((........))).....)))))))......((((((((((..(((.....)))..))))))))--))........((............))..... ( -24.10)
>DroSec_CAF1 26545 99 - 1
CUACAUCGAUAGUCACA-----UCGAUA---GUAUUGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGCAAAAUAUAAGCCGCAUCUC
.......(((.......-----..((((---((.....))))))((((((((((..(((.....)))..))))))))--....-.....((.........)).))))).. ( -24.50)
>DroSim_CAF1 27538 98 - 1
CUACAUCGAUAGUCACA-----UCGAUA---GUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGCAAAA-AUAAGGCGCAUCUC
.......(((.(((((.-----..((((---((.....))))))((((((.......)))))).)))))((((.((.--.(((-((.....))))-)..))))))))).. ( -29.00)
>DroEre_CAF1 26962 106 - 1
CUCCAUCGAUGGCCACCAAAUA--AAUC-GCCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUCAUUUUU-UUUUAGCAAAAUAUAAGCCGCAUCUC
.....((((((((.........--....-))).)))))......((((((((((..(((.....)))..))))))))......-.....((.........)).))..... ( -26.12)
>DroYak_CAF1 28187 106 - 1
CUUCAUCGAUAGCCGCAAAGUAGGAAAA-CCCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC--UUUU-UUUUAGUAAAAUAUAAGCCGCAUCUC
.......(((.((.((...(((((....-.)))))...((((....((((((((..(((.....)))..))))))))--....-...)))).........)).))))).. ( -26.70)
>consensus
CUACAUCGAUAGUCACAAA_UAUCGAUA__CCUAUCGAACUAUCGCGAGUACGCCGCACUCGCAGUGACGUGUACUC__UUUU_UUUUAGCAAAAUAUAAGCCGCAUCUC
.....(((((((...................)))))))........((((((((..(((.....)))..))))))))................................. (-18.61 = -18.69 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:36 2006