Locus 5712

Sequence ID 2L_DroMel_CAF1
Location 16,242,970 – 16,243,090
Length 120
Max. P 0.699223
window9049

overview

Window 9

Location 16,242,970 – 16,243,090
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.70
Mean single sequence MFE -25.32
Consensus MFE -16.34
Energy contribution -16.82
Covariance contribution 0.47
Combinations/Pair 1.07
Mean z-score -1.41
Structure conservation index 0.65
SVM decision value 0.35
SVM RNA-class probability 0.699223
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16242970 120 + 22407834
GUCUGGUGGGAAUAUACAUAUGGUGUUGGAAAUCUAUUGCACAGAACAUGAAUUCUUAUGACCAUUUUUGUGCUUUAGUCUCGCCUUUGGCUUGUAUUUUUCCAAAAAGGACAGCUGCUU
((((..((((((.(((((...((((..(((...(((..(((((((((((((....))))).....))))))))..)))))))))).......))))).))))))....))))........ ( -33.20)
>DroPse_CAF1 1 91 + 1
-----------------------------AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAAACGCGCCUUGGGCUUGUAUUUCUCCAAAUACGAGAGCUGCUU
-----------------------------.....((..(((((((((((((....))))).....))))))))..))...((((......(((((((((....))))))))).)).)).. ( -19.10)
>DroWil_CAF1 1 91 + 1
-----------------------------AAAUCUAUUGCACAGAACAUGAAUUUUUGUGGCCAUUUUUGUGCUUUAGUCGCGCCUUUGGCUUAUAUUUUUCCAAAAAUGAAAGCUGCUU
-----------------------------....(((..((((((((.(((............)))))))))))..)))....((....(((((.((((((....)))))).))))))).. ( -18.80)
>DroYak_CAF1 2307 120 + 1
GUCUGGUGGGAAUAUACAUAUGGUGUUAGAAAUCUAUUGCACAGAACAUGAGUUCUUAUGACCAUUUUUGUGCUUUAGUCUCGCCUUUGGCUUGUAUUUUUCCAAAAAGGACAGCUGCUU
((((..((((((.(((((...((((..(((...(((..((((((((.(((.(((.....))))))))))))))..)))))))))).......))))).))))))....))))........ ( -35.00)
>DroAna_CAF1 5286 120 + 1
AUCUGGUGGGAAUAUACAAAUGGUUUUGGAAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAGCCGCGCCUUUGGCUUGUACUUUUCCAAAAAUGAAAGUUGCUU
.((...((((((..((((...((((..((....(((..(((((((((((((....))))).....))))))))..))).....))...))))))))..)))))).....))......... ( -26.70)
>DroPer_CAF1 1 91 + 1
-----------------------------AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAAACGCGCCUUGGGCUUGUAUUUCUCCAAAUACGAGAGCUGCUU
-----------------------------.....((..(((((((((((((....))))).....))))))))..))...((((......(((((((((....))))))))).)).)).. ( -19.10)
>consensus
_____________________________AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAGUCGCGCCUUUGGCUUGUAUUUUUCCAAAAACGAAAGCUGCUU
.................................(((..(((((((((((((....))))).....))))))))..)))....(((...)))..(((.(((((.......))))).))).. (-16.34 = -16.82 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:48 2006