Locus 5711

Sequence ID 2L_DroMel_CAF1
Location 16,242,539 – 16,242,631
Length 92
Max. P 0.987562
window9048

overview

Window 8

Location 16,242,539 – 16,242,631
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.77
Mean single sequence MFE -18.66
Consensus MFE -17.12
Energy contribution -16.68
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -1.73
Structure conservation index 0.92
SVM decision value 2.08
SVM RNA-class probability 0.987562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16242539 92 - 22407834
UAAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUGUAAAAUGU
(((((((..(((((((...(((.((((...))))..)))..)))).)))....))))))).....(((((.....)))))............ ( -18.40)
>DroSec_CAF1 4687 89 - 1
UCAUUACGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUAUAAAA---
......(((..(((((...(((.((((...))))..)))..)))))..)))..............(((((.....))))).........--- ( -18.90)
>DroSim_CAF1 5019 92 - 1
UCAUUACGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUAUAAAAUCU
......(((..(((((...(((.((((...))))..)))..)))))..)))..............(((((.....)))))............ ( -18.90)
>DroEre_CAF1 6300 89 - 1
UCAUUAUGAACGGCCCGAUUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCAAAGUAGUUAAAACAUAAACAACAUGCUUAAAUGUAAAA---
.((((.(((..(((((..((((.((((...))))..)))).)))))..)))((((((((...........))).))))).)))).....--- ( -17.90)
>DroYak_CAF1 1895 89 - 1
UCAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCCUAUGAAAGUAGUUGAAAAAUAAACCACAUGCUUAAAUGUAAAA---
......(.((((((((...(((.((((...))))..)))..)))))(((....)))))).)..........((((......))))....--- ( -19.20)
>consensus
UCAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUGUAAAA___
......(((..(((((...(((.((((...))))..)))..)))))..)))..((.(((........))).))................... (-17.12 = -16.68 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:47 2006