Locus 571

Sequence ID 2L_DroMel_CAF1
Location 1,763,365 – 1,763,458
Length 93
Max. P 0.941205
window942

overview

Window 2

Location 1,763,365 – 1,763,458
Length 93
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 84.12
Mean single sequence MFE -23.78
Consensus MFE -15.04
Energy contribution -15.12
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -2.84
Structure conservation index 0.63
SVM decision value 1.32
SVM RNA-class probability 0.941205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1763365 93 - 22407834
---CCACGUGGCUGCCAUUAAGUUGGGCCCAGGACCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAGCACUUGCACA------AACUUUUCCACAACU
---....((((........((((((((((.(((.........)))))))).((((((((((.....))))).)))))....------)))))..)))).... ( -28.40)
>DroSec_CAF1 20394 96 - 1
GCCCCACGUGGCUGCCAUUAAGUUGGGCCCAGCCCCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAGCACUUGCACA------AACUUUUCCACAACU
((....(((((..((((.....(((((.......))))).....)))))))))((((((((.....))))).))).))...------............... ( -25.80)
>DroEre_CAF1 20264 87 - 1
GCUGCACGUGGCUGCCAUUAAGUUGGC---------CAAAAACCUGGCCCACGAGUCUGUAAAACUUGCCACACUUGCAUA------AACUUUUCCACAACU
..((((.(((((.........((.(((---------((......))))).))((((.......)))))))))...))))..------............... ( -22.60)
>DroYak_CAF1 27638 98 - 1
GCCCCACGUGGCUGCCAUUAAGUUGGCCCC----CCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCCACACUUGCACACUUUGCAACUUUUCCACAACU
......(((((..((((.....((((....----.)))).....)))))))))(((.((((((...(((.......)))...)))))))))........... ( -22.00)
>DroAna_CAF1 19531 90 - 1
UCCCCACGUGACUGUCAUUAACUUGGCC------CCCAGAAACCUGGCCCACGAGUCACUAAAACUUGCAACACUUGCACA------AAGUUUUCACCAACU
.......((((((((((......)))).------.((((....))))......)))))).((((((((((.....))))..------.))))))........ ( -20.10)
>consensus
GCCCCACGUGGCUGCCAUUAAGUUGGCCCC____CCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAACACUUGCACA______AACUUUUCCACAACU
......(((((..((((.....((((.........)))).....))))))))).............(((.......)))....................... (-15.04 = -15.12 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:58 2006