Locus 5708

Sequence ID 2L_DroMel_CAF1
Location 16,237,941 – 16,238,039
Length 98
Max. P 0.536531
window9045

overview

Window 5

Location 16,237,941 – 16,238,039
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 85.03
Mean single sequence MFE -18.98
Consensus MFE -14.19
Energy contribution -14.38
Covariance contribution 0.19
Combinations/Pair 1.16
Mean z-score -1.44
Structure conservation index 0.75
SVM decision value 0.01
SVM RNA-class probability 0.536531
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16237941 98 - 22407834
UGGAAGCUGCUCUCUUUGAUGGAUAAACAUUUUUCCAUGUUGAUUGGGAGGAAUAUAAUUAAUUUUGUUAUCUUGAUUCGAUAUAAAAUCACUUCCAU
((((((.((...........(((..........)))((((((((..(((..((((..........)))).)))..).))))))).....)))))))). ( -19.10)
>DroSec_CAF1 75 98 - 1
UGGAAGCUUGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUGAUUUUGUUUUCUUGAUUCGAUAUAAAAUCUCUUCCAU
((((((..(((.((((..(......(((((......)))))...)..)))).))).....((((((((..((.......)).)))))))).)))))). ( -19.00)
>DroSim_CAF1 71 98 - 1
UGGAAGCUUGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUAAUUUUGUUUCCUUGAUUCGAUAUAUAAUAUCUUCCAU
((((((...(((.....)))................(((((((.(..(.((((((..........)))))).)..).))))))).......)))))). ( -18.30)
>DroEre_CAF1 2043 98 - 1
UGGAAGCUGUUCAUUACGAUGUAUAAACACCCUUUUACGUCGAUUUGGAGAAAUAUAUUUCGUUUUGUUUCCUUGAUCCGAUAUAUAAUAUCUUUCAU
.((((((..((((...(((((((.((......)).)))))))...))))((((....)))).....)))))).(((...(((((...)))))..))). ( -19.50)
>consensus
UGGAAGCUGGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUAAUUUUGUUUCCUUGAUUCGAUAUAAAAUAUCUUCCAU
((((((...........((((......)))).....(((((((.(..(.((((((..........)))))).)..).))))))).......)))))). (-14.19 = -14.38 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:44 2006