| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,763,099 – 1,763,196 |
| Length | 97 |
| Max. P | 0.823242 |
| Location | 1,763,099 – 1,763,196 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.49 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -20.76 |
| Energy contribution | -20.76 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1763099 97 + 22407834 CACUCUGCGGUCAUGAGACACUUGCUCAUCCUGGUGCUCCAUC------UCCAUCUGCUGCGCCAUCUCACAUCCCAGGCAGCGACCACUGACCUCAGGCCCA ...((((.((((((((((.............((((((..((..------......))..))))))))))).......((......))..))))).)))).... ( -24.61) >DroSec_CAF1 20122 103 + 1 CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUCUCCAUCUCCAUCUGCUGCUCCAUCUCACACUCCAGGCAGCGACCACUGACCUCAGGCCCA ......(((((((((..(((((..........)))))..)))..............((((((...............)))))))))).(((....)))))... ( -27.96) >DroYak_CAF1 27378 91 + 1 CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUC------ACCAUCUCCGG------CUCCUACUCCCGGCAGCAACCACUGACCUCAGUCCCA ....(((.(((((.(.((...(((((.....(((((......)------))))...((((------.........)))).))))))).)))))).)))..... ( -25.00) >consensus CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUC______UCCAUCUGCUGC_CCAUCUCACACUCCAGGCAGCGACCACUGACCUCAGGCCCA ....(((.(((((((((.(....)))))...(((((((((.....................................)).))).)))).))))).)))..... (-20.76 = -20.76 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:57 2006