| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,166,802 – 16,166,900 |
| Length | 98 |
| Max. P | 0.607873 |
| Location | 16,166,802 – 16,166,900 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.95 |
| Mean single sequence MFE | -39.68 |
| Consensus MFE | -30.91 |
| Energy contribution | -31.97 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16166802 98 - 22407834 UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGAGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAACGACCACUUCCAAAU ....((.((((((.((..((((((((((((((....))((((((((((.........)))))))))).)))))))).)))).)))))))).))..... ( -38.50) >DroSec_CAF1 83801 98 - 1 UGCCGAUGUGGUAAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGUUUGACAACGACCACUUCCAAAU ....((.(((((...((((....)).(((((((((.((..((((((((((.....))))))))))..)))))))))))..))...))))).))..... ( -41.40) >DroSim_CAF1 85471 98 - 1 UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGUUUGACAACGACCACUUCCAAAU ....((.((((((..((((....)).(((((((((.((..((((((((((.....))))))))))..)))))))))))..))..)))))).))..... ( -42.40) >DroEre_CAF1 87141 98 - 1 UGCCGAUGUGGUUAGUGGGUUAGCUGGAACCGGCAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAAUGACCACUUCCAAAU ....((.(((((((....((((((((((((((.(((((((((((....)))).)))))))....))))..)))))).))))..))))))).))..... ( -41.10) >DroYak_CAF1 92260 98 - 1 UGCCGAUGUGGUUAGUGGGUAAGCUGGAACCGGAAGCGUUACCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGCUUUGGCAACGACCACUUCCAAAU ........(((..(((((....((..((..(((((.((..(.((((((((.....)))))))).)..))))))).))..)).....))))).)))... ( -33.60) >DroAna_CAF1 79953 98 - 1 UGCCGAUGUGGUCAGUGGUGUUGUGGGCACCGGCAGCGUUAUCGUCGGAGACCGGUGCUGGUUAUGGUGCUCCGGCUUGACCAUGACCACCUCCAAAU ....((.(((((((.((((((((.((((((((.((((...((((..(....)))))))))....))))))))))))...))))))))))).))..... ( -41.10) >consensus UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAACGACCACUUCCAAAU ....((.((((((..((....(((((((((((....))((((((((((((.....)))))))))))).)))))))))...))..)))))).))..... (-30.91 = -31.97 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006