Locus 5666

Sequence ID 2L_DroMel_CAF1
Location 16,090,393 – 16,090,488
Length 95
Max. P 0.692765
window8982

overview

Window 2

Location 16,090,393 – 16,090,488
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -22.58
Consensus MFE -13.24
Energy contribution -14.23
Covariance contribution 0.99
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.59
SVM decision value 0.33
SVM RNA-class probability 0.692765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16090393 95 - 22407834
---------UUUUUUCGGUGAGCUUGUGCGCUGCUAUAUAU--CUGUGUAUGUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
---------............(((..(((((((((((((((--........))))))).)).(((((...........)))))...........))))))..))). ( -24.90)
>DroSec_CAF1 19407 87 - 1
------------UUUCGGUGAGCUUGUGCGC---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
------------.........(((..(((((---(.((((.--(((--(((......)))).(((((...........)))))...)).)))).))))))..))). ( -24.20)
>DroSim_CAF1 19418 87 - 1
------------UUUCGGUGAGCUUGUGCGC---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
------------.........(((..(((((---(.((((.--(((--(((......)))).(((((...........)))))...)).)))).))))))..))). ( -24.20)
>DroEre_CAF1 20945 101 - 1
UUUUUGUUUUUUUUUUGGUGAGCUUGUGCGC---UAUAUAUAAAUG--AAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
.....................(((..(((((---((((((((....--....)))))))...(((((...........)))))...........))))))..))). ( -23.30)
>DroYak_CAF1 20425 87 - 1
U------------UUUGGUUAGCUCGUGCAG---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
.------------........((((((((((---(((((((--...--.....)))))))).(((((...........))))).............))))))))). ( -23.80)
>DroAna_CAF1 19129 74 - 1
---------U---UU---------UGUGCG-----AAUUGU--CGA--CGAGUGAGUGUGCCGAGAGAAUUUUAUUAGUACUCAUAAGUUGUAAAGUGUAUGGC--
---------.---.(---------..((((-----..(((.--(((--(..((((((((....(((....)))....))))))))..)))))))..))))..).-- ( -15.10)
>consensus
____________UUUCGGUGAGCUUGUGCGC___UAUAUAU__CUG__UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA
.....................((((((((((...(((((((............)))))))..(((((...........)))))............)))))))))). (-13.24 = -14.23 +   0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:44 2006