| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,760,519 – 1,760,622 |
| Length | 103 |
| Max. P | 0.524634 |
| Location | 1,760,519 – 1,760,622 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.42 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -18.48 |
| Energy contribution | -20.24 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1760519 103 - 22407834 GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAAC---GAAGAGCAACCAUUUUUGUUGACUUGU--UGGUGGCUUUGGUUUGUUGCGUGU-------- (..(----((((.(((((..(...((((((((((((((.((....(((........---.....))).)).)))))))))))..))--).)..))))).).))))..)....-------- ( -30.82) >DroSec_CAF1 17553 107 - 1 GUGGCAGGCAGCAAAAGUUGCAAAAUCGUCGACAAAAGCGGAAAAUGCAAACCAGC---GGAGAGCAACCAGUUUUGUUGACUUGU--UGGUGGCUUUGGUUUGUUGCGUGU-------- (..((((((....(((((..(......(((((((((((((.....)))......((---.....))......))))))))))....--..)..))))).))))))..)....-------- ( -34.80) >DroEre_CAF1 17401 111 - 1 GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAACGCAAACCAGC---GGAGAGCAACCAUUUUUGUUGACUUGC--UGGCGGCUUUGGUUUGUUGCGUGUUGCAGUCU (..(----(((((((((((((...((((((((((((((((.....)))......((---.....))......))))))))))..))--).))))))).......)))).)))..)..... ( -37.91) >DroYak_CAF1 24834 105 - 1 GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAGC---GGAGAGCAACCAUUUUUGUUGACUUGCUUUGGUGGCUUUGGUUUGUUGCGUGU-------- (..(----((((.(((((..(.((((((((((((((((.((....(((...((...---))...))).)).)))))))))))..))))).)..))))).).))))..)....-------- ( -36.00) >DroAna_CAF1 17065 104 - 1 GUGA----CAGCAAAAGUUG-AAAAGCGUCGACAAAAGCGAAAAAUAGAAACUGGUAACAGA-AACACAAAUUGUUGUUGACUUGU--UGGUGGCUCUGGUUUAGUGUGCAU-------- ....----((((((..(((.-...)))((((((..................(((....))).-((((.....))))))))))))))--))...((.(.........).))..-------- ( -20.10) >consensus GUGA____CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAGC___GGAGAGCAACCAUUUUUGUUGACUUGU__UGGUGGCUUUGGUUUGUUGCGUGU________ ........(((((((((((((....(((((((((((((.((....(((...((......))...))).)).)))))))))))..))....))))))....)))))))............. (-18.48 = -20.24 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:53 2006