Locus 5650

Sequence ID 2L_DroMel_CAF1
Location 16,025,067 – 16,025,157
Length 90
Max. P 0.824665
window8958

overview

Window 8

Location 16,025,067 – 16,025,157
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 77.95
Mean single sequence MFE -16.08
Consensus MFE -11.04
Energy contribution -12.10
Covariance contribution 1.06
Combinations/Pair 1.22
Mean z-score -1.49
Structure conservation index 0.69
SVM decision value 0.69
SVM RNA-class probability 0.824665
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16025067 90 + 22407834
-----AGUUGUUGCUCUGCUCACACACCAUACUCU--------GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUUU
-----.((((((((...(((.....((((......--------...))))...))).))))))))...((((((((....))))))))............... ( -17.70)
>DroSim_CAF1 205037 90 + 1
-----AGUUGCUGCUCUGCUCACACCCCAUACUCC--------GCCUGGUCAAAGUUUCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUUU
-----..((((((....(((...(((.........--------....)))...))).....)))))).((((((((....))))))))............... ( -11.62)
>DroEre_CAF1 189550 98 + 1
-----AGUUGUUGCUCUACUCAUACACCAUACUCCAUACACCAUCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU
-----.((((((((...(((.....((((.................))))...))).))))))))...((((((((....))))))))............... ( -16.73)
>DroWil_CAF1 193290 89 + 1
UUUGC-CUUAUUGCAUUGCUCAUACGCCGU-------------CCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGAUUUUUCCUCC
(((((-..(((((((..(((.....((((.-------------...))))...)))))))))))))))((((((((....))))))))............... ( -17.70)
>DroYak_CAF1 186723 98 + 1
-----AUUUGUUGCCCUGCUCAUACACCAUACGCCAUGCACCCCCCUGGUCAAAGUUGCAACAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU
-----..(((((((...(((.....((((.................))))...))).)))))))((..((((((((....))))))))..))........... ( -14.33)
>DroAna_CAF1 134662 87 + 1
UUCGUAGUUGUUGCAUCGCUCAUAC-------GCC--------GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUU-UUUAUGUAAUGAUUUCUCUGCC
.((((.(((((((((..(((.....-------(((--------....)))...))))))))))))...(((((((.....-))))))).)))).......... ( -18.40)
>consensus
_____AGUUGUUGCUCUGCUCAUACACCAUACUCC________GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU
......((((((((...(((.....((((.................))))...))).))))))))...((((((((....))))))))............... (-11.04 = -12.10 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:21 2006