Locus 5649

Sequence ID 2L_DroMel_CAF1
Location 16,023,644 – 16,023,747
Length 103
Max. P 0.711573
window8957

overview

Window 7

Location 16,023,644 – 16,023,747
Length 103
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.57
Mean single sequence MFE -11.32
Consensus MFE -7.03
Energy contribution -7.03
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.62
SVM decision value 0.38
SVM RNA-class probability 0.711573
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16023644 103 + 22407834
----ACAAUGCAU-ACCAAAAAAAAUAAAAACAUGACAAAGAACAAGUGUCAUGCUAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAAAAAAAA
----....((((.-.................(((((((.........)))))))........)))).......................................... (  -7.27)
>DroPse_CAF1 224485 87 + 1
----CCAAUGCAU-AAAGGAA-------AAACAUGACAACGAACAAGUGUCAUGAGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCC--------AAAAA-AAAA
----.........-...((((-------...(((((((.(......)))))))).(((((.((....)).)))))...........))))--------.....-.... ( -14.80)
>DroEre_CAF1 188144 91 + 1
----ACAAUGCAU-ACCGAAA-------AAACAUGACAAAGAACAAGUGUCAUGCUAA-AAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAA----AAA
----....((((.-.......-------...(((((((.........)))))))....-...))))...................................----... (  -8.67)
>DroYak_CAF1 185302 94 + 1
----ACAAUGCAU-GCCGAAA-------AAACAUGACAAAGAACAAGUGUCAUGCUAA-AAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAAA-AAAA
----........(-((.....-------...(((((((.........)))))))....-....))).....................................-.... (  -8.69)
>DroAna_CAF1 132496 97 + 1
AUUGCCAUGGCACAGCCCAAA-------AAACAUGACAACAAACAAGUGUCAUGCGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCAGCAACAAAAA----AAU
..(((....)))..((.....-------...(((((((.(......)))))))).(((((.((....)).)))))................))........----... ( -13.70)
>DroPer_CAF1 253992 86 + 1
----CCAAUGCAU-AAAGGAA-------AAACAUGACAACGAACAAGUGUCAUGAGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCC--------AAAA--AAAA
----.........-...((((-------...(((((((.(......)))))))).(((((.((....)).)))))...........))))--------....--.... ( -14.80)
>consensus
____ACAAUGCAU_ACCGAAA_______AAACAUGACAAAGAACAAGUGUCAUGCGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAA__AAAA
...............................(((((((.........)))))))...................................................... ( -7.03 =  -7.03 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:20 2006