| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,021,108 – 16,021,217 |
| Length | 109 |
| Max. P | 0.540199 |
| Location | 16,021,108 – 16,021,217 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -19.38 |
| Energy contribution | -20.05 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16021108 109 + 22407834 UAAUUAAGAACGCUCAGAGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCGAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAACC-- .............((((((((((((......))))))))...(((((.....(((((((...))))))).)))))......(((......))).))))...........-- ( -24.10) >DroSec_CAF1 196850 109 + 1 UAAUUAAGAACGCUCGGAGUGUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCAAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAACC-- .......((......(((((.((((......)))).))))).(((((.....(((((((...)))))))............(((......)))..)))))...))....-- ( -21.20) >DroSim_CAF1 200608 109 + 1 UAAUUAAGAACGCUCGGAGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCAAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAACC-- .......((......((((((((((......)))))))))).(((((.....(((((((...)))))))............(((......)))..)))))...))....-- ( -25.30) >DroEre_CAF1 185818 108 + 1 UAAUUAAGAACGCUCGGAGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCAAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAAC--- .......((......((((((((((......)))))))))).(((((.....(((((((...)))))))............(((......)))..)))))...))...--- ( -25.30) >DroYak_CAF1 181790 111 + 1 UAAUUAAGAACGCUCGGAGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCAAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAACUCA .......((......((((((((((......)))))))))).(((((.....(((((((...)))))))............(((......)))..)))))...))...... ( -25.30) >DroAna_CAF1 130463 98 + 1 UAAUUAAGAACGCCCAGUGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUU-UUAACAGCGCAGCUGUUACCAAAGCCCCA------CCAUUCAACCG----ACUCCGCC-- ...........((..((((((((((......)))))))............-.(((((((...)))))))...........------...........----)))..)).-- ( -18.70) >consensus UAAUUAAGAACGCUCGGAGUCUGGCCAAAGAGUCAGACUUCAUUUCGAUUUUUAACAGCGCAGCUGUUACCAAAAACCCAACGAUUCCAUUCGCCUGAAAAACUCAACC__ .......(((.....((((((((((......))))))))))...........(((((((...)))))))....................)))................... (-19.38 = -20.05 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:18 2006