| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,981,121 – 15,981,214 |
| Length | 93 |
| Max. P | 0.687191 |
| Location | 15,981,121 – 15,981,214 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -13.31 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15981121 93 - 22407834 -CACAACUGCCGGAGGACAAUCAAAUUGCUUGUCCACUAAUCG----CAAAGUAAAGCCGCAAGGCAAGGAAAAGGCAAACAAGAUGACUAAUAAAUG -......((((((.((((((.(.....).)))))).)).....----.........(((....)))........)))).................... ( -22.90) >DroPse_CAF1 169224 93 - 1 GCUCGAUGGCCA-AAGCAAAUCAAACUGCUCGCCCACUAAUCA----CACAGGCGAGCCGCAAGGCGGAGAAUGAGCAAACAAGAUUUCCAGCAAAGG (((((.(..((.-..(((........)))(((((.........----....)))))(((....)))))..).)))))..................... ( -25.62) >DroSec_CAF1 156733 93 - 1 -CUUAACUGCCGGAGGAAAAUCAAAUUGCUUGUCCACUAAUCG----CAAAGUAAAGCCGCAAGGCAUGGAAAAGGCAAACAAGAUGACUCAUAAAUG -...........(((....(((...((((((.((((((.....----...)))...(((....)))..)))..))))))....)))..)))....... ( -21.40) >DroSim_CAF1 160305 93 - 1 -CAAAACUGCCGGAGGAAAAUCAAAUUGCUUGUCCACUAAUCG----CAAAGUAAAGCCGCAAGGCAUGGAAAAGGCAAACAAGAUGACUCAUAAAUG -...........(((....(((...((((((.((((((.....----...)))...(((....)))..)))..))))))....)))..)))....... ( -21.40) >DroEre_CAF1 143493 93 - 1 -AACAACUGCCGGAUGAAAAUCAAAUUGCCUGUCCACUAAUCG----CAAAGUGAAGCCGCAAGGCAAGGAAGAGGCAAACAAAAUGUCUAAUAAAUG -.(((.......(((....)))...((((((.(((.....(((----(...)))).(((....)))..)))..))))))......))).......... ( -25.20) >DroYak_CAF1 141914 97 - 1 -CACAACUGCCGGCUGAAAAUCAAAUUGCUUGUCCACCAAUCGUGGACAAAGUAAAGCCGCAAGGCAAGGCAAAGGCAAACAAGAUGUCUAAUAAAUG -......((((.(((..........((((((((((((.....)))))).)))))).(((....)))..)))...)))).................... ( -32.10) >consensus _CACAACUGCCGGAGGAAAAUCAAAUUGCUUGUCCACUAAUCG____CAAAGUAAAGCCGCAAGGCAAGGAAAAGGCAAACAAGAUGACUAAUAAAUG .......((((..............((((((..................)))))).(((....)))........)))).................... (-13.31 = -13.92 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:05 2006