Locus 5634

Sequence ID 2L_DroMel_CAF1
Location 15,974,400 – 15,974,509
Length 109
Max. P 0.781717
window8939

overview

Window 9

Location 15,974,400 – 15,974,509
Length 109
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 93.60
Mean single sequence MFE -20.45
Consensus MFE -18.83
Energy contribution -18.82
Covariance contribution -0.00
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.92
SVM decision value 0.56
SVM RNA-class probability 0.781717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15974400 109 + 22407834
UCCUCUGACAGCGUGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAUA--UAUAUAUAUAGCCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU
......((..(((.....)))..))((((.(((......................(((((((((.--...))))))))).(((((....))))).......))).)))).. ( -21.00)
>DroSec_CAF1 149841 105 + 1
UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCUACUUGCCAAAUAUAGUUAUAUAU------AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU
........(((..(((.........))).)))............(((((......(((((((..------..))))))).(((((....)))))...........))))). ( -18.10)
>DroSim_CAF1 152189 105 + 1
UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAU------AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU
........(((..(((.........))).)))............(((((......(((((((..------..))))))).(((((....)))))...........))))). ( -18.10)
>DroEre_CAF1 136763 111 + 1
UCCUCUGACAGCUGGCCACGCCCCCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAUAGAUAUAUGUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU
........(((.((((.........)))))))............(((((......((((((((((....)))))))))).(((((....)))))...........))))). ( -24.60)
>consensus
UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAU______AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU
........((((.(((.........)))..(((......................((((((((((....)))))))))).(((((....)))))....)))..)))).... (-18.83 = -18.82 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:03 2006