Locus 5632

Sequence ID 2L_DroMel_CAF1
Location 15,971,810 – 15,971,910
Length 100
Max. P 0.523309
window8937

overview

Window 7

Location 15,971,810 – 15,971,910
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.62
Mean single sequence MFE -21.47
Consensus MFE -14.66
Energy contribution -14.33
Covariance contribution -0.33
Combinations/Pair 1.18
Mean z-score -1.24
Structure conservation index 0.68
SVM decision value -0.02
SVM RNA-class probability 0.523309
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15971810 100 + 22407834
ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGUA-GCAAUGCUCGCAU------------------
......((((((.....(((....)))..(((...-..((....))(((....))).((((((((....))))))))..)))))))))-((.......))..------------------ ( -20.50)
>DroPse_CAF1 152182 118 + 1
ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAACUGCAAAAUCAUUUGCGGUCAGGAGCCGAA-GCAGAGGCCGAAUGAAACAAAAUUCAUGUGA
.....................(((........((.-....((..(((.(..(((...((((((((....)))))))))))..))))..-))...))..((((........))))..))). ( -23.20)
>DroSec_CAF1 147155 101 + 1
ACUUAUUACGGCCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGUAGGCAAUGCUCGCAU------------------
..........(((((....................-.)))))....(((..((....((((((((....)))))))).))..)))(..(((...)))..)..------------------ ( -21.20)
>DroEre_CAF1 134228 100 + 1
ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGGA-GUAAUGUUCGCAU------------------
...((((((..((......................-..((....))(((..((....((((((((....)))))))).))..))))).-)))))).......------------------ ( -20.70)
>DroAna_CAF1 83216 89 + 1
ACAUAUUACGACCAUAAUUAAUACUAAAUUCCCUAAAAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGCAAAGAAGC-----CAG--------U------------------
......................................((((....(((....))).((((((((....))))))))......))-----)).--------.------------------ ( -20.00)
>DroPer_CAF1 180897 118 + 1
ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAACUGCAAAAUCAUUUGCGGUCAGGAGCCGAA-GCAGAGGCCGAAUGAAACAAAAUUCAUGUGA
.....................(((........((.-....((..(((.(..(((...((((((((....)))))))))))..))))..-))...))..((((........))))..))). ( -23.20)
>consensus
ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA_AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGAA_GCAAUGCUCGCAU__________________
............................((((......((....))(((....))).((((((((....))))))))..))))..................................... (-14.66 = -14.33 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:01 2006