Locus 5617

Sequence ID 2L_DroMel_CAF1
Location 15,910,570 – 15,910,672
Length 102
Max. P 0.781451
window8917

overview

Window 7

Location 15,910,570 – 15,910,672
Length 102
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 85.22
Mean single sequence MFE -26.32
Consensus MFE -19.10
Energy contribution -20.30
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.73
SVM decision value 0.56
SVM RNA-class probability 0.781451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15910570 102 + 22407834
CACCACCGUCAGUUGCCCUCAACCUCAACCUCGGCUUCGUCCUCACCCGCAAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG
...((((((.(((.((((((............(((((((........)).)))))((((...))----------))............)))))).)))....)))))).... ( -32.30)
>DroSec_CAF1 86889 101 + 1
CACCACCGUCA-UUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCUAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG
...((((((..-..((((((...........((....)).........((..((.((((...))----------))...))...))..))))))........)))))).... ( -23.60)
>DroSim_CAF1 87748 97 + 1
CACCACCGUCAGUUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCUAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGU-----
....(((((.(((.((((((...........((....)).........((..((.((((...))----------))...))...))..)))))).)))....)))))----- ( -23.60)
>DroEre_CAF1 74854 104 + 1
CACCUCCGUCAGUUGCCCUCG------ACCUCGUCUUCGUCCUCAUCCGCCAGCCUGUCCUCGU--GUCCUCGUCAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAA
((((......(((.(((((((------(...((....)).........((..((.......((.--.....))......))...)))))))))).)))......)))).... ( -23.72)
>DroYak_CAF1 66581 103 + 1
AACCUCCGUCAGUUGCCCUCA------ACCUCGUCUUCGUCCUCAUCCGCAAGCCUCUCCUCGACAGUGCU---CCUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG
...(.((((.(((.((((((.------.....(.(((((........)).))).).......((((((((.---.....)))))).)))))))).)))....)))).).... ( -28.40)
>consensus
CACCACCGUCAGUUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCAAGCCUGUCCUCGA__________CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG
...((((((.(((.((((((................(((....((..(....)..))....)))...............((...))..)))))).)))....)))))).... (-19.10 = -20.30 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:42 2006