Locus 5613

Sequence ID 2L_DroMel_CAF1
Location 15,902,437 – 15,902,535
Length 98
Max. P 0.507838
window8913

overview

Window 3

Location 15,902,437 – 15,902,535
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 75.22
Mean single sequence MFE -25.68
Consensus MFE -13.40
Energy contribution -13.32
Covariance contribution -0.08
Combinations/Pair 1.45
Mean z-score -1.60
Structure conservation index 0.52
SVM decision value -0.05
SVM RNA-class probability 0.507838
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15902437 98 - 22407834
GGUUUUGGAGAUCAAAUUCGUGGUGACGGUACAUCACUUCAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUAGCAGCAAAAGAACAAACAAA-------AA
.(((..((((.......((.((((((.(((.....))))))))).))((((((((....)))).)))).))))..)))..................-------.. ( -21.40)
>DroSec_CAF1 77398 98 - 1
GGUUUUGGAGAUCAAGUUCGUAGUGACAGUACAUCACUACAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUAUCAUUGCUAGAACCAACAAA-------AA
((((((((.(((.(((...(((((((.......))))))).......((((((((....)))).))))....))))))....))))))))......-------.. ( -27.20)
>DroSim_CAF1 76964 98 - 1
GGUUUUGGAGAUCAAGUUUGUGGUGACAGUACAUCACUACAUCAAGAGUCGCUUGAAGGUAAGUCGACAUAUCUUACCAUUGCUGGAGCCAACAAA-------AA
(((((..(...((((((.((((((((.......)))))))).........)))))).((((((.........))))))....)..)))))......-------.. ( -29.10)
>DroEre_CAF1 65280 97 - 1
GGUGUUGGAGAUCAAAUUCGUGGUCACGGUGCACCACUUCAUCAAGAGUCGCUUAAAGGUGAGUUGGCAUACCUCAGCAUCUGUGGAACCUAC-AA-------AA
((((((((.(((((......)))))..((((..(((.(((((((((.....)))...)))))).)))..))))))))))))(((((...))))-).-------.. ( -28.10)
>DroYak_CAF1 56770 98 - 1
GGUUUUGGAGAUCAAAUUCGUGGUGACAGUGCAUCACUUCAUCAAGAGUCGCUUAAAGGUGAGCUGGCAUUCGAUACCAUAUGUGGAGCCUACCAA-------AA
(((.(((((..(((.((((.((((((.((((...)))))))))).)))).(((((....))))))))..))))).))).....(((......))).-------.. ( -25.40)
>DroPer_CAF1 93425 96 - 1
UGUUCUGGAAAUCAAUUUCGUGGUGACCGUGCAUCACUUUAUAAAGGGACGCUUGAAGGUUGGCUCUGAUC---------UAGUCAAACCAACUAUAUAGCCUAA
.(((((.((((....))))((((((......))))))........)))))(((....((((((...((((.---------..))))..))))))....))).... ( -22.90)
>consensus
GGUUUUGGAGAUCAAAUUCGUGGUGACAGUACAUCACUUCAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUACCAUUAGUGGAACCAACAAA_______AA
((((((.............((((((......))))))..........((((((((....)))).))))................))))))............... (-13.40 = -13.32 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:38 2006