Locus 5609

Sequence ID 2L_DroMel_CAF1
Location 15,888,320 – 15,888,440
Length 120
Max. P 0.897961
window8909

overview

Window 9

Location 15,888,320 – 15,888,440
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -42.68
Consensus MFE -36.74
Energy contribution -37.10
Covariance contribution 0.36
Combinations/Pair 1.09
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 1.00
SVM RNA-class probability 0.897961
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15888320 120 - 22407834
CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUACGAUCGAGGGCAGCUCGACCGAGCAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACUGCCAAGA
...........(((.....)))....((.((((((.(.((((((((((((((.........))).)))))).))))).)......(((.((((......))))))))))))).))..... ( -40.90)
>DroSec_CAF1 61758 120 - 1
CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA
.......(((((((.....)))((((((..(((((((.((((((((((((((.........))).)))))).)))))...))))))))))))).........)))).((....))..... ( -42.50)
>DroSim_CAF1 61954 120 - 1
CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA
.......(((((((.....)))((((((..(((((((.((((((((((((((.........))).)))))).)))))...))))))))))))).........)))).((....))..... ( -42.50)
>DroEre_CAF1 51324 120 - 1
CCUUUAAAAAGCCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGGCGAAGAAAAACCUGCCCAUCGAUGGACAGGUGAAUGUGGAGUUUCCCAUUCCAGCGACCGGCAAGA
..........((((.....))))...(((((((((((.(((((((((((.((......)).....)))))).))))).))...(.(((((.((.....))))))))))))).)))).... ( -45.90)
>DroYak_CAF1 40363 120 - 1
CCUUCAGGAAGCCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGUUCGACCGAGAAAAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUUAGCGACCGCCAAGA
......((((((((.....)).((((((..(((((((.((((((((((((((......)))....)))))).)))))...))))))))))))).))))))..((((.((....)).)))) ( -41.60)
>consensus
CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA
...........(((.....))).......((((((((.((((((((((((((.........))).)))))).))))).)).....(((((.((.....))))))).))))))........ (-36.74 = -37.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:34 2006