Locus 5606

Sequence ID	2L_DroMel_CAF1
Location	15,882,004 – 15,882,112
Length	108
Max. P	0.559420

overview

Window 4

Location	15,882,004 – 15,882,112
Length	108
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	86.84
Mean single sequence MFE	-20.10
Consensus MFE	-13.11
Energy contribution	-12.80
Covariance contribution	-0.31
Combinations/Pair	1.14
Mean z-score	-1.74
Structure conservation index	0.65
SVM decision value	0.05
SVM RNA-class probability	0.559420
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15882004 108 + 22407834
UAUAUAUACAUAUAUAUGAAAUAUAUA------UAGACCGCUGUACAGUUUGCCAUAAUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUACUAUGUACGAGCUGUGUUCGUG
(((((((((((....)))...))))))------))...(((..(((((((((...........((((((....)))))).......((((....)))).)))))))))...))) ( -15.90)
>DroSim_CAF1 55568 102 + 1
UAUAUA------UAUAUGAAAUAUAUA------UGGACCGAUGUACAGUUUGCCAUAUUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG
......------((((((((....(((------(((.(.(((.....))).)))))))..)))))))).......(((((((.........)))))))((((((...)))))). ( -18.80)
>DroEre_CAF1 44927 99 + 1
UAUAU--------AUAUGAAAUAUAUA------UAGACUGCUACACAGUUUGCCAUAUUCUUCAUAUA-UCCAUUAUAUACUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG
...((--------(((((((..((((.------(((((((.....)))))))..))))..))))))))-).....(((((((.........)))))))((((((...)))))). ( -23.10)
>DroYak_CAF1 32541 106 + 1
UAUAU--------AUAUGAAAUAUAUAUGUAUGUAGACUGCUGCACGGUUUGCCAUUUUCUACAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG
.....--------...(((((((((((((((((((((.....(((.....))).....))))))))))......)))))).)))))((((....))))((((((...)))))). ( -22.60)
>consensus
UAUAU________AUAUGAAAUAUAUA______UAGACCGCUGCACAGUUUGCCAUAUUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG
..............((((((.............(((....)))(((((((((...........((((((....)))))).......((((....)))).))))))))))))))) (-13.11 = -12.80 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:29 2006