Locus 5604

Sequence ID 2L_DroMel_CAF1
Location 15,879,988 – 15,880,099
Length 111
Max. P 0.965030
window8902

overview

Window 2

Location 15,879,988 – 15,880,099
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -40.16
Consensus MFE -33.78
Energy contribution -34.34
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.05
Structure conservation index 0.84
SVM decision value 1.58
SVM RNA-class probability 0.965030
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15879988 111 - 22407834
UGGUCCUAGGCUCUCGGUUUUCGGCUCCUACCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC
.(((.....((((((((((((((((.((.(((((((((((........))).))).))))))).)).))))))))))))...)).......)))................. ( -42.60)
>DroSec_CAF1 53461 111 - 1
UGGUCCUAGGUUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUAGCUACUACUUACAUACAGC
((((....(..((((((((((((((.....((((((.(...(((((....))))).).)))))))).))))))))))))..)((........)).))))............ ( -39.50)
>DroSim_CAF1 53543 111 - 1
UGGUCCUAGGUUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC
.(((..(((((((((((((((((((.....((((((.(...(((((....))))).).)))))))).))))))))))))............)))))..))).......... ( -41.10)
>DroEre_CAF1 42563 110 - 1
UGGUCCCAGGCUCUCGGUUUUCGCCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAU-
.(((.....((((((((((((((((.(((((((....(....)(((....)))))))))).)))....)))))))))))...)).......)))................- ( -39.30)
>DroYak_CAF1 30345 111 - 1
UGGUCCUAGGCACUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGAUGGCGCUCGAAAGCCGAGACUUGCAAAAUUUACCUACUACUUACAUACAGC
.(((.....((((((((((((((((.....((((((((...(((((....))))))))).)))))).)))))))))))...))).......)))................. ( -38.30)
>consensus
UGGUCCUAGGCUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC
.(((.....((((((((((((((((.....((((((((...(((((....))))))))).)))))).))))))))))))...)).......)))................. (-33.78 = -34.34 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:27 2006