| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,875,257 – 15,875,373 |
| Length | 116 |
| Max. P | 0.507967 |
| Location | 15,875,257 – 15,875,373 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -35.63 |
| Consensus MFE | -24.01 |
| Energy contribution | -22.68 |
| Covariance contribution | -1.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15875257 116 + 22407834 AAACCAA----ACGGAUCAAACUCACUUGGGCAGCACUGCUUGGACCUUCAUAUUGCCGUAGCUCUGAAAGCGCUUAUGAUGACCCAUGGUUACAUUAAAAGUGGCCUUCAGGGAGGGCU ...((..----((((...........(..((((....))))..)............))))..(((((((.((((((.((((((((...)))..))))).)))).)).))))))).))... ( -31.50) >DroPse_CAF1 40985 110 + 1 ----UAU----UUGGUUU--ACUUACUGGGCCAACACUGAUACCACUUUCAUUGUGCUGAAGCUCUGGAAGCGCUUGUGGUGGCCCAGGGUCACAUUGAAAGUGGCCUUAAGAGCGGGCU ----...----..((((.--.(((.((((((((.((((((........)))..(((((...........)))))..))).))))))))((((((.......))))))....)))..)))) ( -40.20) >DroSim_CAF1 48805 116 + 1 AAACUAA----ACGGAUCAAACUCACUUGGGCAGCACUGCUUGGACCUUCAUAUUGCCGUAGCUCUGAAAGCGCUUGUGAUGACCCAUGGUUACAUUAAAAGUGGCCUUUAGGGAGGGCU ...((((----(.((.(((...((((..(.((..((..((((((............))).)))..))...)).)..))))))).))..((((((.......)))))))))))........ ( -27.80) >DroEre_CAF1 38841 120 + 1 AAGCCAUCCACACGGAUCAAACUCACUUGGGCUGCACAGCUUGGAUAUGCAUAUUGCUGUAGCUCUGGAAGCGCUUGUGAUGACCCAUGGUCACAUUAAAAGUGGCCUUCAGGGAGGGCU .((((.(((....((.(((...((((..(.(((.((.((((...(((.((.....))))))))).))..))).)..))))))).))..((((((.......)))))).....))).)))) ( -40.00) >DroYak_CAF1 25017 116 + 1 AAACUAU----AUGGAUCAAACUCACUUGGGCUGCACAGCUCGGAUAUUCAUAUUGCUGUAGCUCUGAAAGCGCUUGUGAUGACCAAUGGUCACAUUAAAAGUGGCCUUCAGGGAGGGCU ..(((((----.(((.(((...((((..(.(((.((.(((((((.((.......))))).)))).))..))).)..)))))))))))))))(((.......)))((((((...)))))). ( -32.90) >DroPer_CAF1 66713 110 + 1 ----UAU----UUGGUUU--ACUUACUGGGCCAACACUGAUACCACUUUCAUGGUGCUGAAGCUCUGGAAGCGCUUGUGGUGGCCCAGGGUCACAUUGAAAGUGGCCUUAAGAGCGGGCU ----...----..((((.--.(((.((((((((.(((......(.((((((.(((......))).)))))).)...))).))))))))((((((.......))))))....)))..)))) ( -41.40) >consensus AAACUAU____ACGGAUCAAACUCACUUGGGCAGCACUGCUUGGACAUUCAUAUUGCUGUAGCUCUGAAAGCGCUUGUGAUGACCCAUGGUCACAUUAAAAGUGGCCUUCAGGGAGGGCU ...........................((((((....))))))............(((....(((((((.(((((((((.(((((...))))))))...)))).)).)))))))..))). (-24.01 = -22.68 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:17 2006