| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,866,603 – 15,866,711 |
| Length | 108 |
| Max. P | 0.635006 |
| Location | 15,866,603 – 15,866,711 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.73 |
| Mean single sequence MFE | -22.08 |
| Consensus MFE | -15.03 |
| Energy contribution | -14.95 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15866603 108 - 22407834 UCUCCCAUCGAUUUACCGUUUUACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGCGGGACUU ..((((...........((((........)---------)))................((((((..(((..((((((.((........)).))))))..))).)))))).))))... ( -18.00) >DroPse_CAF1 31561 107 - 1 UUUCCCAUCC--UU--------GGGGAUGCAAUUUGUGUAUCGUCCUGGCUGUUCUUCCUGGUGUUUGACGGCAAUCAGAGCUAUAAAGUGGAUUGUCAUUAUCAUCAUGAGGGCAU ...((((...--.)--------)))((((((.....))))))(((((((........))(((((..(((.(((((((...(((....))).))))))).))).)))))..))))).. ( -33.20) >DroSec_CAF1 40364 99 - 1 UCUCCCACCGAUUA--------ACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((((.(((..--------......((---------(((.((.((........))..)).)))))...((((((.((........)).)))))).......))).))))))..- ( -21.60) >DroSim_CAF1 40051 99 - 1 UCUCCCAGCGAUUA--------ACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((...(((..--------......((---------(.....)))......)))(((((((..(((..((((((.((........)).))))))..))).)))))))))))..- ( -19.24) >DroEre_CAF1 30647 99 - 1 UCUUUCACCGAUUU--------ACCGACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGAGCGAUAAAAUAGAUUGCCAUUAUCGUCAGUGGGAGC- .((..(((.(((..--------......((---------(((.((.((........))..)).)))))...((((((..............)))))).......))).)))..)).- ( -19.44) >DroYak_CAF1 15105 99 - 1 UCUCCCAUCGAUUU--------ACCAACCA---------AACCUCUUGUUUCAUAUCAGUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((((.(((..--------......((---------(((.(((((........))).)).)))))...((((((.((........)).)))))).......))).))))))..- ( -21.00) >consensus UCUCCCAUCGAUUU________ACCAACCA_________AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU_ .......................................................(((((((((..(((..((((((.((........)).))))))..))).)))))))))..... (-15.03 = -14.95 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:02 2006