Locus 559

Sequence ID 2L_DroMel_CAF1
Location 1,741,255 – 1,741,356
Length 101
Max. P 0.677323
window926

overview

Window 6

Location 1,741,255 – 1,741,356
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.06
Mean single sequence MFE -21.96
Consensus MFE -10.01
Energy contribution -11.95
Covariance contribution 1.94
Combinations/Pair 1.24
Mean z-score -2.23
Structure conservation index 0.46
SVM decision value 0.30
SVM RNA-class probability 0.677323
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1741255 101 + 22407834
AUUAAUUUGCUUGCAACAAGUAAA-----UAAUUUGUA------GUCAAAU---AUCAACAUA---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU
.....(((((((((.((((((...-----..)))))).------....(((---.(((.....---...))).--))).........)))))))))..(((((((........))))))) ( -22.30)
>DroSim_CAF1 4868 101 + 1
AUUAAUUUGCUUGCAACAAAUAAA-----CAAUUUGUA------GUCAAAU---AUCAACAUU---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU
.....(((((((((.((((((...-----..)))))).------....(((---.(((.....---...))).--))).........)))))))))..(((((((........))))))) ( -22.30)
>DroWil_CAF1 13909 115 + 1
AUUAC-AUAUUCGCAAU--GUAAACCAUGCAUUUUGUUUUCUCAUUCAAUUUUUCUAAACAUUUAAAAAUGAAUGGUUAACGCCCCA-CAUGAACACAUGU-AUCAAUUCUAUUGAGAGA
.....-...(((.((((--((.((((((.((((((((((.................))))).....))))).)))))).)).....(-((((....)))))-.........)))).))). ( -17.63)
>DroYak_CAF1 4900 101 + 1
UUUAAUUUGCUCGCAACAAAUAAA-----UAAUUUGUA------GUCAAAU---AGCAACAUU---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCUGAAGCGGCU
.....(((((((((.((((((...-----..)))))).------......(---(((..(((.---..)))..--))))........)))))))))..(((((((........))))))) ( -25.60)
>consensus
AUUAAUUUGCUCGCAACAAAUAAA_____CAAUUUGUA______GUCAAAU___AUCAACAUU___AAAUGAA__GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU
.....(((((((((.((((((..........))))))......................(((......)))................)))))))))..(((((((........))))))) (-10.01 = -11.95 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:42 2006