Locus 5588

Sequence ID 2L_DroMel_CAF1
Location 15,857,534 – 15,857,638
Length 104
Max. P 0.891730
window8872

overview

Window 2

Location 15,857,534 – 15,857,638
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 85.07
Mean single sequence MFE -24.80
Consensus MFE -19.23
Energy contribution -20.04
Covariance contribution 0.81
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.78
SVM decision value 0.97
SVM RNA-class probability 0.891730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15857534 104 + 22407834
AACUUCUCAUUUACAAUCUCUGCUGGCAGAGUGUGUAAAAAAAGAGAAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCUGGCAG
..((((((.((((((..(((((....)))))..))))))....))))))..(((..(((....)))....((((((.((((.....)))).)))))).)))... ( -29.70)
>DroSec_CAF1 29778 103 + 1
AACUUCUCAUUUACAAUCUCUGCUGGUAAAGUGUGUAAA-AAAGAGGAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG
...................(((((((.............-...(((.(((.......)))....)))...((((((.((((.....)))).))))))))))))) ( -24.70)
>DroSim_CAF1 30837 104 + 1
AACUUCUCAUUUACAAUCUCUGCUGGUAAAGUGUGUAAAAAAAGAGAAGCACCCAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG
...................(((((((....(.((((............)))).)................((((((.((((.....)))).))))))))))))) ( -23.40)
>DroEre_CAF1 17092 80 + 1
AACUUCUCAUUUACAAUCUCUGCUGGCAAAGUGUGUG------------------------AAACUCAAACUCAGAUGUCAUAGCCCGACUUUUGAGCCGGCAG
...................((((((((.....((.((------------------------.....)).))(((((.(((.......))).))))))))))))) ( -21.40)
>consensus
AACUUCUCAUUUACAAUCUCUGCUGGCAAAGUGUGUAAA_AAAGAGAAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG
...................((((((((...((((..............))))...................(((((.((((.....)))).))))))))))))) (-19.23 = -20.04 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:58 2006