Locus 5580

Sequence ID 2L_DroMel_CAF1
Location 15,847,230 – 15,847,330
Length 100
Max. P 0.729633
window8857

overview

Window 7

Location 15,847,230 – 15,847,330
Length 100
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.41
Mean single sequence MFE -16.34
Consensus MFE -14.27
Energy contribution -14.27
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.01
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.729633
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15847230 100 - 22407834
UCUAGUA----------------UUCAA----UUAUACGUGCAAAUUAAGCAUAUUCUUUCAGUGCACUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA
....(((----------------(....----..))))..(((((((((........((((((((..........))))))))......)))))))))(((((............))))) ( -16.54)
>DroSim_CAF1 19912 100 - 1
UAUAGUA----------------CUCAA----UUUUUUUUGCAAAUUAAGCAUAUUCUUUCAGUGCAUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA
.......----------------.....----........(((((((((........((((((((..........))))))))......)))))))))(((((............))))) ( -14.64)
>DroEre_CAF1 4494 120 - 1
AUCAGUAAAUGUACACUGCCAUAGUUAAGGUUUCCUAUAUGCAAAUUAAACAUAUUCUUUCAGUGCUUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA
...((.(((((((....(((........))).........(((((((((........((((((((..........))))))))......)))))))))..)))))))))........... ( -17.84)
>consensus
UAUAGUA________________CUCAA____UUAUAUAUGCAAAUUAAGCAUAUUCUUUCAGUGCAUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA
........................................(((((((((........((((((((..........))))))))......)))))))))(((((............))))) (-14.27 = -14.27 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:44 2006